Basic Information
Locus ID:
Sgl76965
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Oligouridylate-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB8 | 33053354 | 33059775 | - | Sgl76965 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.10 | 46,603.00 Da | 43.66 | 67.84 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12352 | RRM1_TIA1_like | 55 | 125 | 2.36875E-36 | - |
| CDD | cd12354 | RRM3_TIA1_like | 258 | 333 | 5.49697E-33 | - |
| CDD | cd12619 | RRM2_PUB1 | 139 | 213 | 3.33522E-51 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 260 | 325 | 4.1E-11 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 140 | 210 | 1.3E-16 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 55 | 121 | 9.9E-12 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 132 | 218 | 2.82E-26 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 250 | 339 | 8.69E-20 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 37 | 131 | 3.9E-23 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 135 | 7.3E-23 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 236 | 338 | 1.9E-21 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 136 | 217 | 5.0E-24 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 259 | 329 | 9.1E-16 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 54 | 123 | 3.6E-16 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 139 | 212 | 4.5E-23 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 53 | 127 | 14.760482 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 138 | 216 | 16.704798 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 258 | 333 | 14.709315 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 237 | 256 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_021720428.1 | oligouridylate-binding protein 1B-like isoform X2 [Chenopodium quinoa] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A803KQY9 | Oligouridylate-binding protein 1-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology