Basic Information
Locus ID:
Sgl76506
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
receptor-like protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB8 | 30025260 | 30029729 | + | Sgl76506 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.79 | 165,830.31 Da | 39.69 | 84.00 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09272 | RNase_HI_RT_Ty1 | 1330 | 1468 | 9.34489E-66 | - |
| Pfam | PF07727 | Reverse transcriptase (RNA-dependent DNA polymerase) | 1004 | 1245 | 2.0E-72 | IPR013103 |
| Pfam | PF00665 | Integrase core domain | 621 | 719 | 3.2E-11 | IPR001584 |
| Pfam | PF14244 | gag-polypeptide of LTR copia-type | 36 | 82 | 1.1E-13 | IPR029472 |
| Pfam | PF03732 | Retrotransposon gag protein | 112 | 212 | 2.2E-7 | IPR005162 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 1007 | 1432 | 1.6E-29 | IPR043502 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 618 | 779 | 5.44E-36 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 615 | 794 | 4.7E-35 | IPR036397 |
| ProSiteProfiles | PS50994 | Integrase catalytic domain profile. | 608 | 785 | 18.935028 | IPR001584 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 948 | 975 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 857 | 931 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 328 | 346 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 245 | 289 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 946 | 975 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 326 | 346 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 857 | 906 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23160.2 | - | 0 |
| RefSeq | XP_048494802.1 | uncharacterized protein LOC109134389 [Beta vulgaris subsp. vulgaris] | 0 |
| Q94HW2 | Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2N9GZW3 | Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS33057 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg10961 |
| Amaranthaceae | Suaeda glauca | 13 | Sgl03301, Sgl07869, Sgl08373, Sgl10700, Sgl16034, Sgl34010 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.8BG0008630 |