Basic Information
Locus ID:
Sgl75301
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB8 | 7873224 | 7897307 | + | Sgl75301 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.32 | 95,802.53 Da | 34.29 | 82.35 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00628 | PHD-finger | 521 | 563 | 2.5E-7 | IPR019787 |
| Pfam | PF16135 | Tify domain binding domain | 261 | 316 | 8.0E-13 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 455 | 504 | 2.1E-13 | IPR032308 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 744 | 833 | 2.56E-8 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 604 | 643 | 7.4E-6 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 509 | 565 | 7.82E-15 | IPR011011 |
| Gene3D | G3DSA:3.40.630.30 | - | 736 | 839 | 1.3E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 511 | 598 | 3.0E-16 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 599 | 648 | 5.9E-10 | IPR013083 |
| SMART | SM00249 | PHD_3 | 521 | 562 | 8.8E-11 | IPR001965 |
| SMART | SM00249 | PHD_3 | 606 | 646 | 2.6 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 519 | 564 | 10.068501 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 522 | 561 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 393 | 419 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 398 | 413 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37520.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_010684186.1 | uncharacterized protein LOC104898779 isoform X2 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A0K9RIM7 | Increased DNA methylation 1 OS=Spinacia oleracea OX=3562 GN=SOVF_067560 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology