Basic Information
Locus ID:
Sgl75141
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Zinc finger BED domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB8 | 5769475 | 5770197 | - | Sgl75141 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.07 | 27,107.70 Da | 36.51 | 70.67 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02892 | BED zinc finger | 59 | 105 | 3.3E-5 | IPR003656 |
| SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 59 | 112 | 3.69E-7 | IPR036236 |
| SMART | SM00614 | bed5 | 56 | 109 | 3.0E-13 | - |
| ProSiteProfiles | PS50808 | Zinc finger BED-type profile. | 56 | 114 | 10.473193 | IPR003656 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 54 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G42170.1 | BED zinc finger ;hAT family dimerisation domain. transposase-like gene with conserved domains from the family of hAT transposases that includes hobo from Drosophila melanogaster, Activator (Ac) from maize, and Tam3 from snapdragon but lacks several amino acids known to be essential for Ac transposition5. The DAYSLEEPER gene lacks 8 bp duplications and TIRs (a common feature of transcriptionally silent hAT transposases), however, DAYSLEEPER expression was detected, and several expressed sequence tags are available. The expression seems to be under the control of factors determining the circadian rhythm. DAYSLEEPER was isolated as a factor binding to a motif (Kubox1) present in the upstream region of the Arabidopsis DNA repair gene Ku70. Mutant plants lacking DAYSLEEPER or strongly overexpressing this gene do not develop in a normal manner. | 0 |
| RefSeq | XP_019104921.2 | uncharacterized protein LOC104893683 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9M2N5 | Zinc finger BED domain-containing protein DAYSLEEPER OS=Arabidopsis thaliana OX=3702 GN=HAT PE=1 SV=1 | 0 | |
| TrEMBL | A0A803L9Y2 | BED-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 4 | gene_18523, gene_18908, gene_24739, gene_757 |
| Amaranthaceae | Atriplex hortensis | 4 | Ah002403, Ah025340, Ah025341, Ah035896 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_6g136250, BVRB_7g170450 |
| Amaranthaceae | Salicornia bigelovii | 7 | Sbi_jg16564, Sbi_jg23483, Sbi_jg33887, Sbi_jg40651 ... |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg14931, Seu_jg27982 |
| Amaranthaceae | Suaeda glauca | 8 | Sgl18348, Sgl25401, Sgl30582, Sgl30712, Sgl32903, Sgl38164 ... |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000006175, gene:ENSEOMG00000019503 |
| Amaranthaceae | Chenopodium quinoa | 30 | CQ.Regalona.r1.1AG0015170, CQ.Regalona.r1.1BG0000790 ... |
| Plantaginaceae | Plantago ovata | 1 | Pov_00009065 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G16891 |
| Zosteraceae | Zostera marina | 2 | Zosma04g10920.v3.1, Zosma04g21000.v3.1 |