Basic Information
Locus ID:
Sgl75128
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Short Name:
UPL4
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB8 | 5662984 | 5674673 | - | Sgl75128 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.19 | 175,272.88 Da | 49.78 | 91.39 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1189 | 1584 | 5.58461E-114 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1235 | 1586 | 4.8E-78 | IPR000569 |
| SUPERFAMILY | SSF48371 | ARM repeat | 92 | 544 | 8.64E-36 | IPR016024 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1181 | 1579 | 4.45E-91 | IPR035983 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1472 | 1584 | 5.5E-32 | - |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1155 | 1363 | 2.1E-39 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 102 | 550 | 3.5E-47 | IPR011989 |
| SMART | SM00119 | hect_3 | 1201 | 1586 | 6.4E-95 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1203 | 1586 | 60.288036 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 82 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 71 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02880.1 | ubiquitin-protein ligase 4. encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. | 0 |
| RefSeq | XP_010667232.1 | E3 ubiquitin-protein ligase UPL4 isoform X2 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9LYZ7 | E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana OX=3702 GN=UPL4 PE=3 SV=1 | 0 | |
| TrEMBL | A0A0J8B6J2 | HECT-type E3 ubiquitin transferase OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_007490 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology