Basic Information
Locus ID:
Sgl75070
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
F-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB8 | 5116200 | 5117447 | - | Sgl75070 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.35 | 49,068.51 Da | 50.70 | 88.31 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 8 | 44 | 6.4E-8 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 8 | 87 | 7.85E-14 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 6 | 59 | 8.5E-11 | - |
| SMART | SM00256 | fbox_2 | 9 | 48 | 5.9E-8 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 113 | 279 | 6.1E-16 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 3 | 48 | 10.928167 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23880.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_021734128.1 | F-box protein CPR30-like [Chenopodium quinoa] | 0 |
| Q9LIR8 | F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana OX=3702 GN=At3g23880 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6P9E6L1 | F-box/kelch-repeat protein At3g06240-like OS=Juglans regia OX=51240 GN=LOC118343780 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 3 | Ah000544, Ah000545, Ah000548 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g117790 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017365 |
| Amaranthaceae | Suaeda glauca | 16 | Sgl02265, Sgl02998, Sgl03016, Sgl07416, Sgl08131, Sgl33489 ... |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000005978, gene:ENSEOMG00000020505 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.5AG0023440, CQ.Regalona.r1.5BG0024920 ... |