Basic Information
Locus ID:
Sgl74784
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB8 | 2580481 | 2585945 | - | Sgl74784 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.06 | 43,126.15 Da | 57.43 | 60.87 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 328 | 368 | 7.05807E-29 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 327 | 373 | 5.5E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 328 | 374 | 8.48E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 313 | 378 | 3.8E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 329 | 367 | 2.9E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 329 | 368 | 11.353297 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 24 | 41 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 50 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 15 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09770.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010684105.1 | probable E3 ubiquitin-protein ligase LOG2 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9S752 | Probable E3 ubiquitin-protein ligase LOG2 OS=Arabidopsis thaliana OX=3702 GN=LOG2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9S0M0 | RING-type E3 ubiquitin transferase OS=Spinacia oleracea OX=3562 GN=SOVF_007980 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology