Basic Information
Locus ID:
Sgl74777
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB8 | 2543189 | 2548886 | - | Sgl74777 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.95 | 54,650.93 Da | 56.46 | 85.37 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 254 | 302 | 2.85332E-16 | - |
| Pfam | PF12906 | RING-variant domain | 254 | 301 | 9.4E-12 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 250 | 305 | 8.24E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 239 | 309 | 2.2E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 253 | 302 | 1.3E-20 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 246 | 308 | 20.390905 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 157 | 179 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 456 | 501 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 472 | 501 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 101 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010684110.2 | uncharacterized protein LOC104898704 isoform X2 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A0K9RWD1 | RING-CH-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_027570 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology