Basic Information
Locus ID:
Sgl74450
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
heterogeneous nuclear ribonucleoprotein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB8 | 77639 | 87379 | + | Sgl74450 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.42 | 49,026.03 Da | 55.29 | 77.61 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00590 | RRM_SF | 124 | 190 | 3.26422E-18 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 124 | 190 | 8.0E-17 | IPR000504 |
| Pfam | PF00646 | F-box domain | 358 | 399 | 8.8E-10 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 358 | 396 | 7.19E-12 | IPR036047 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 117 | 210 | 7.74E-24 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 28 | 210 | 1.9E-28 | IPR012677 |
| Gene3D | G3DSA:1.20.1280.50 | - | 359 | 399 | 2.8E-10 | - |
| SMART | SM00360 | rrm1_1 | 123 | 198 | 1.1E-20 | IPR000504 |
| SMART | SM00256 | fbox_2 | 363 | 402 | 7.5E-4 | IPR001810 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 122 | 202 | 17.080015 | IPR000504 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 357 | 408 | 9.894885 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 107 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 94 | - | - |
| Coils | Coil | Coil | 36 | 89 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G52660.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_021856917.1 | heterogeneous nuclear ribonucleoprotein Q [Spinacia oleracea] | 0 |
| Q9ASP6 | Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana OX=3702 GN=LIF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C8ZMQ1 | Heterogeneous nuclear ribonucleoprotein Q OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology