Basic Information
Locus ID:
Sgl74343
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA8 | 42261707 | 42263583 | + | Sgl74343 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.81 | 33,169.14 Da | 52.89 | 60.17 | -0.79 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 152 | 186 | 2.9E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 253 | 288 | 1.8E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 121 | 296 | 1.61E-24 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 21 | 298 | 6.6E-24 | IPR015943 |
| SMART | SM00320 | WD40_4 | 245 | 288 | 8.7E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 147 | 186 | 6.6E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 196 | 233 | 4.7 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 255 | 290 | 10.021053 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 255 | 297 | 12.446706 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 154 | 188 | 9.520146 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 154 | 188 | 11.377324 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 275 | 289 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 74 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 144 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G20330.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_021847902.1 | WD repeat-containing protein 70 [Spinacia oleracea] | 0 |
| Q5EB92 | WD repeat-containing protein 70 OS=Rattus norvegicus OX=10116 GN=Wdr70 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QER3 | WD_REPEATS_REGION domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_187390 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||