Basic Information
Locus ID:
Sgl74310
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
DNA repair protein XRCC3 homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA8 | 41855032 | 41860643 | - | Sgl74310 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.32 | 74,343.77 Da | 52.42 | 83.02 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08423 | Rad51 | 406 | 634 | 6.1E-36 | IPR013632 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 407 | 655 | 1.02E-28 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 406 | 658 | 9.2E-46 | IPR027417 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 404 | 569 | 31.219257 | IPR020588 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 78 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 116 | 135 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 31 | 55 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 12 | 29 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 116 | 154 | - | - |
| Coils | Coil | Coil | 78 | 98 | - | - |
| Coils | Coil | Coil | 109 | 129 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57450.1 | homolog of X-ray repair cross complementing 3 (XRCC3). Involved in homologous recombination and recombinational repair, mutants are sterile, hypersensitive to DNA crosslinking agents, show aberrant meiosis with extensive chromosome fragmentation | 0 |
| RefSeq | XP_048493295.1 | DNA repair protein XRCC3 homolog [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FKM5 | DNA repair protein XRCC3 homolog OS=Arabidopsis thaliana OX=3702 GN=XRCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8J5VSP9 | RECA_2 domain-containing protein OS=Zizania palustris OX=103762 GN=GUJ93_ZPchr0002g24355 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||