Basic Information
Locus ID:
Sgl74274
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Short Name:
ABCC5
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA8 | 41396991 | 41404240 | + | Sgl74274 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.03 | 103,030.89 Da | 43.95 | 101.91 | 0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 363 | 657 | 3.26141E-97 | IPR044726 |
| CDD | cd03250 | ABCC_MRP_domain1 | 97 | 238 | 2.95875E-77 | - |
| CDD | cd03244 | ABCC_MRP_domain2 | 703 | 903 | 2.43056E-117 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 365 | 607 | 4.1E-28 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 104 | 191 | 1.2E-9 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 709 | 857 | 1.2E-28 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 101 | 261 | 1.02E-40 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 695 | 903 | 9.55E-60 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 364 | 665 | 2.09E-51 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 81 | 282 | 5.4E-55 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 666 | 911 | 2.8E-71 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 324 | 663 | 1.2E-61 | IPR036640 |
| SMART | SM00382 | AAA_5 | 718 | 903 | 5.3E-14 | IPR003593 |
| SMART | SM00382 | AAA_5 | 50 | 247 | 7.8 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 14 | 262 | 17.046955 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 682 | 926 | 15.346283 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 365 | 635 | 35.482025 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 164 | 178 | - | IPR017871 |
| Coils | Coil | Coil | 317 | 341 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04120.1 | multidrug resistance-associated protein 5. encodes a high-affinity inositol hexakisphosphate transporter that plays a role in guard cell signaling and phytate storage. It is a member of MRP subfamily / ABC transporter subfamily C. | 0 |
| RefSeq | XP_010684771.2 | ABC transporter C family member 5 [Beta vulgaris subsp. vulgaris] | 0 |
| Q7GB25 | ABC transporter C family member 5 OS=Arabidopsis thaliana OX=3702 GN=ABCC5 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803M957 | ABC-type xenobiotic transporter OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology