Basic Information
Locus ID:
Sgl74258
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Short Name:
ABCC5
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA8 | 41247746 | 41257362 | + | Sgl74258 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.51 | 168,126.05 Da | 39.68 | 106.64 | 0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03250 | ABCC_MRP_domain1 | 626 | 825 | 7.69455E-102 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 950 | 1244 | 3.69946E-93 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1267 | 1487 | 1.72888E-124 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 313 | 600 | 1.19876E-105 | IPR044746 |
| Pfam | PF00664 | ABC transporter transmembrane region | 952 | 1194 | 9.1E-28 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 644 | 778 | 7.5E-18 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 316 | 580 | 3.2E-31 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1286 | 1434 | 2.5E-28 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 621 | 848 | 3.92E-54 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 951 | 1252 | 7.32E-51 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 294 | 612 | 8.11E-41 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1261 | 1498 | 7.2E-66 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 284 | 609 | 4.8E-58 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 911 | 1250 | 3.1E-61 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 613 | 868 | 2.2E-73 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1253 | 1504 | 6.9E-81 | IPR027417 |
| SMART | SM00382 | AAA_5 | 1295 | 1480 | 7.0E-14 | IPR003593 |
| SMART | SM00382 | AAA_5 | 653 | 834 | 1.8E-12 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 952 | 1222 | 35.482025 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1269 | 1503 | 17.453781 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 315 | 592 | 38.77145 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 626 | 849 | 22.682514 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 751 | 765 | - | IPR017871 |
| Coils | Coil | Coil | 904 | 928 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04120.1 | multidrug resistance-associated protein 5. encodes a high-affinity inositol hexakisphosphate transporter that plays a role in guard cell signaling and phytate storage. It is a member of MRP subfamily / ABC transporter subfamily C. | 0 |
| RefSeq | XP_021722170.1 | ABC transporter C family member 5-like [Chenopodium quinoa] | 0 |
| Q7GB25 | ABC transporter C family member 5 OS=Arabidopsis thaliana OX=3702 GN=ABCC5 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803M957 | ABC-type xenobiotic transporter OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology