Basic Information
Locus ID:
Sgl74130
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA8 | 39758729 | 39760765 | - | Sgl74130 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.16 | 38,687.69 Da | 35.62 | 73.77 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 294 | 327 | 4.6E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 171 | 206 | 1.2E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 152 | 347 | 1.4E-31 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 269 | 350 | 1.2E-18 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 149 | 264 | 8.0E-14 | IPR015943 |
| Gene3D | G3DSA:3.30.1370.210 | - | 8 | 59 | 1.1E-6 | - |
| SMART | SM00320 | WD40_4 | 290 | 327 | 5.7E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 246 | 283 | 7.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 167 | 206 | 1.7E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 209 | 244 | 410.0 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 31 | 56 | 2.9E-4 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 136 | 162 | 0.23 | IPR000571 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 297 | 336 | 14.017362 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 174 | 206 | 11.181047 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 174 | 215 | 13.983944 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 136 | 163 | 12.286202 | IPR000571 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 31 | 57 | 13.121832 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 297 | 330 | 10.627413 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 314 | 328 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 270 | 284 | 1.8E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 314 | 328 | 1.8E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 193 | 207 | 1.8E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_021765944.1 | zinc finger CCCH domain-containing protein 48-like [Chenopodium quinoa] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803L354 | Zinc finger CCCH domain-containing protein 48-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology