Basic Information
Locus ID:
Sgl73910
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA8 | 37881703 | 37892128 | + | Sgl73910 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.13 | 209,985.66 Da | 43.48 | 71.89 | -0.73 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15539 | PHD1_AIRE | 1186 | 1225 | 6.25065E-16 | - |
| CDD | cd01887 | IF2_eIF5B | 99 | 309 | 1.77902E-85 | - |
| Pfam | PF00009 | Elongation factor Tu GTP binding domain | 100 | 306 | 2.9E-31 | IPR000795 |
| Pfam | PF16135 | Tify domain binding domain | 1108 | 1155 | 3.0E-18 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 1172 | 1227 | 6.42E-13 | IPR011011 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 96 | 317 | 2.79E-55 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1174 | 1277 | 4.6E-18 | IPR013083 |
| Gene3D | G3DSA:3.40.50.300 | - | 89 | 318 | 2.6E-69 | IPR027417 |
| SMART | SM00384 | AT_hook_2 | 487 | 499 | 8.7 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 649 | 661 | 13.0 | IPR017956 |
| SMART | SM00249 | PHD_3 | 1185 | 1226 | 2.2E-10 | IPR001965 |
| SMART | SM00384 | AT_hook_2 | 573 | 585 | 0.32 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 448 | 460 | 210.0 | IPR017956 |
| SMART | SM00249 | PHD_3 | 1227 | 1286 | 18.0 | IPR001965 |
| SMART | SM00384 | AT_hook_2 | 823 | 835 | 71.0 | IPR017956 |
| TIGRFAM | TIGR00231 | small_GTP: small GTP-binding protein domain | 101 | 227 | 3.6E-15 | IPR005225 |
| ProSiteProfiles | PS51722 | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 96 | 312 | 43.193398 | IPR000795 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 1183 | 1228 | 9.632401 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 1186 | 1225 | - | IPR019786 |
| PRINTS | PR00315 | GTP-binding elongation factor signature | 164 | 174 | 3.5E-6 | IPR000795 |
| PRINTS | PR00315 | GTP-binding elongation factor signature | 180 | 191 | 3.5E-6 | IPR000795 |
| PRINTS | PR00929 | AT-hook-like domain signature | 571 | 582 | 6.3E-6 | IPR017956 |
| PRINTS | PR00929 | AT-hook-like domain signature | 487 | 497 | 6.3E-6 | IPR017956 |
| PRINTS | PR00315 | GTP-binding elongation factor signature | 100 | 113 | 3.5E-6 | IPR000795 |
| PRINTS | PR00315 | GTP-binding elongation factor signature | 216 | 225 | 3.5E-6 | IPR000795 |
| PRINTS | PR00929 | AT-hook-like domain signature | 647 | 657 | 6.3E-6 | IPR017956 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1009 | 1035 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1691 | 1711 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 91 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 516 | 780 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 456 | 486 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1643 | 1664 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 750 | 766 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 536 | 567 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 439 | 503 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 729 | 749 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1009 | 1048 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 91 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 643 | 699 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 36 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1574 | 1600 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G36740.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein. | 0 |
| RefSeq | XP_010679053.2 | uncharacterized protein LOC104894503 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| F4IXE7 | Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RSQ4 | PHD-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_032500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology