Basic Information
Locus ID:
Sgl73025
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
RING-H2 finger protein ATL79-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA8 | 31466803 | 31467210 | + | Sgl73025 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.66 | 15,261.28 Da | 24.53 | 98.30 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 99 | 127 | 6.28398E-9 | - |
| Pfam | PF13639 | Ring finger domain | 77 | 127 | 2.5E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 77 | 132 | 1.63E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 53 | 134 | 8.4E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 78 | 126 | 1.2E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 78 | 127 | 13.167916 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_010512806.1 | PREDICTED: RING-H2 finger protein ATL64-like [Camelina sativa] | 0 |
| TrEMBL | A0A803L791 | RING-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg24554 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg11646 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73025, Sgl76565 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0874s00003.v1.0 |