Basic Information
Locus ID:
Sgl73022
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA8 | 31453620 | 31454163 | + | Sgl73022 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.93 | 16,645.71 Da | 31.21 | 87.18 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 101 | 139 | 1.25577E-9 | - |
| Pfam | PF12678 | RING-H2 zinc finger domain | 86 | 139 | 4.6E-10 | IPR024766 |
| SUPERFAMILY | SSF57850 | RING/U-box | 85 | 142 | 9.94E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 56 | 142 | 2.3E-14 | IPR013083 |
| SMART | SM00184 | ring_2 | 85 | 138 | 9.6E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 86 | 139 | 11.146755 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17970.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_047324043.1 | RING-H2 finger protein ATL79-like [Impatiens glandulifera] | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah033733 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg1762 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg2989 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl73022 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000026581 |