Basic Information
Locus ID:
Sgl73014
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
U-box domain-containing protein 33-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA8 | 31383207 | 31409817 | + | Sgl73014 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.08 | 231,575.39 Da | 49.52 | 81.31 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 1981 | 2022 | 8.66816E-22 | - |
| CDD | cd01989 | STK_N | 1255 | 1405 | 1.12167E-37 | - |
| CDD | cd00012 | NBD_sugar-kinase_HSP70_actin | 617 | 790 | 2.02543E-19 | - |
| Pfam | PF14111 | Domain of unknown function (DUF4283) | 150 | 291 | 3.1E-30 | IPR025558 |
| Pfam | PF04564 | U-box domain | 1977 | 2045 | 1.2E-15 | IPR003613 |
| Pfam | PF00022 | Actin | 612 | 982 | 6.2E-143 | IPR004000 |
| Pfam | PF00069 | Protein kinase domain | 1710 | 1912 | 1.6E-30 | IPR000719 |
| SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 613 | 762 | 7.77E-65 | IPR043129 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 1258 | 1372 | 4.81E-6 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1688 | 1959 | 3.14E-55 | IPR011009 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1975 | 2046 | 1.59E-20 | - |
| SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 755 | 983 | 7.22E-94 | IPR043129 |
| Gene3D | G3DSA:3.90.640.10 | Actin; Chain A, domain 4 | 789 | 880 | 1.2E-181 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1776 | 1977 | 1.2E-41 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 1242 | 1372 | 9.9E-7 | IPR014729 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1684 | 1775 | 4.2E-19 | - |
| Gene3D | G3DSA:3.30.420.40 | - | 617 | 978 | 1.2E-181 | - |
| Gene3D | G3DSA:3.30.420.40 | - | 747 | 947 | 1.2E-181 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1978 | 2046 | 2.7E-22 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 1980 | 2043 | 1.2E-20 | IPR003613 |
| SMART | SM00268 | actin_3 | 614 | 984 | 4.9E-233 | IPR004000 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 321 | 336 | 9.323063 | IPR001878 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 1976 | 2047 | 29.67909 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1704 | 1971 | 28.428434 | IPR000719 |
| ProSitePatterns | PS00406 | Actins signature 1. | 662 | 672 | - | IPR004001 |
| ProSitePatterns | PS00432 | Actins signature 2. | 965 | 973 | - | IPR004001 |
| ProSitePatterns | PS01132 | Actins and actin-related proteins signature. | 713 | 725 | - | IPR020902 |
| PRINTS | PR00190 | Actin signature | 724 | 737 | 1.8E-52 | IPR004000 |
| PRINTS | PR00190 | Actin signature | 749 | 768 | 1.8E-52 | IPR004000 |
| PRINTS | PR00190 | Actin signature | 670 | 692 | 1.8E-52 | IPR004000 |
| PRINTS | PR00190 | Actin signature | 658 | 669 | 1.8E-52 | IPR004000 |
| PRINTS | PR00190 | Actin signature | 845 | 861 | 1.8E-52 | IPR004000 |
| PRINTS | PR00190 | Actin signature | 635 | 644 | 1.8E-52 | IPR004000 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1112 | 1132 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1112 | 1145 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 70 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 335 | 351 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 382 | 435 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 494 | 508 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 52 | 70 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 11 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 335 | 459 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 474 | 520 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 354 | 369 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 474 | 493 | - | - |
| Coils | Coil | Coil | 1110 | 1130 | - | - |
| Coils | Coil | Coil | 1606 | 1668 | - | - |
| Coils | Coil | Coil | 1522 | 1598 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37620.1 | actin 1. Member of the actin gene family. Expressed in mature pollen. | 0 |
| RefSeq | XP_021720868.1 | U-box domain-containing protein 33-like isoform X1 [Chenopodium quinoa] | 0 |
| O81221 | Actin OS=Gossypium hirsutum OX=3635 PE=3 SV=1 | 0 | |
| TrEMBL | A0A834W1D3 | U-box domain-containing protein 33-like OS=Senna tora OX=362788 GN=G2W53_037621 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg8343 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5897 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah028043 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g173960 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg1771, Sbi_jg34761 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg2966 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003189 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73014, Sgl76555 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000005998, gene:ENSEOMG00000037084 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0002760, CQ.Regalona.r1.9BG0002910 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30060120 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G015300 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103703486 |
| Asteraceae | Flaveria trinervia | 1 | Ftri3G07742 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G2185 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G2344 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g19320 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g00360, gene.Thate07g13830 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.1282 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00002356 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G06851 |
| Poaceae | Echinochloa crus-galli | 1 | CH09.1232 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0636500, gene-QOZ80_8BG0665160 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0107400.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_038480 |
| Poaceae | Oryza coarctata | 2 | Oco19G000020, Oco20G000020 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g01060.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G243300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0305210, Pt_Chr0305250 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr20G000540, Chr29G002590, Chr29G002600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG008760, gene_TRIDC2BG010580 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G079300.1, TraesCS2B02G094100.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb082370_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-42544 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g23218 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.1862, evm.TU.LG14.17 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g01350 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_13_RagTag.819 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-30196 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19659 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16208 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000015l.489 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015439 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4407 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-20956 |
| Salicaceae | Populus euphratica | 3 | populus_peu02133, populus_peu02253, populus_peu35663 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132643562 |
| Solanaceae | Solanum chilense | 1 | SOLCI004543800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107003136 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_2626 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G0082 |
| Zosteraceae | Zostera marina | 1 | Zosma01g38570.v3.1 |