HalophFGD

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Basic Information
Locus ID: Sgl73014
Species & Taxonomic ID: Suaeda glauca & 397272
Genome Assembly: GWHEQCX00000000
Description: U-box domain-containing protein 33-like
Maps and Mapping Data
Chromosome Start End Strand ID
chrA8 31383207 31409817 + Sgl73014
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
6.08 231,575.39 Da 49.52 81.31 -0.55
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
CDD cd16655 RING-Ubox_WDSUB1_like 1981 2022 8.66816E-22 -
CDD cd01989 STK_N 1255 1405 1.12167E-37 -
CDD cd00012 NBD_sugar-kinase_HSP70_actin 617 790 2.02543E-19 -
Pfam PF14111 Domain of unknown function (DUF4283) 150 291 3.1E-30 IPR025558
Pfam PF04564 U-box domain 1977 2045 1.2E-15 IPR003613
Pfam PF00022 Actin 612 982 6.2E-143 IPR004000
Pfam PF00069 Protein kinase domain 1710 1912 1.6E-30 IPR000719
SUPERFAMILY SSF53067 Actin-like ATPase domain 613 762 7.77E-65 IPR043129
SUPERFAMILY SSF52402 Adenine nucleotide alpha hydrolases-like 1258 1372 4.81E-6 -
SUPERFAMILY SSF56112 Protein kinase-like (PK-like) 1688 1959 3.14E-55 IPR011009
SUPERFAMILY SSF57850 RING/U-box 1975 2046 1.59E-20 -
SUPERFAMILY SSF53067 Actin-like ATPase domain 755 983 7.22E-94 IPR043129
Gene3D G3DSA:3.90.640.10 Actin; Chain A, domain 4 789 880 1.2E-181 -
Gene3D G3DSA:1.10.510.10 Transferase(Phosphotransferase) domain 1 1776 1977 1.2E-41 -
Gene3D G3DSA:3.40.50.620 HUPs 1242 1372 9.9E-7 IPR014729
Gene3D G3DSA:3.30.200.20 Phosphorylase Kinase; domain 1 1684 1775 4.2E-19 -
Gene3D G3DSA:3.30.420.40 - 617 978 1.2E-181 -
Gene3D G3DSA:3.30.420.40 - 747 947 1.2E-181 -
Gene3D G3DSA:3.30.40.10 Zinc/RING finger domain, C3HC4 (zinc finger) 1978 2046 2.7E-22 IPR013083
SMART SM00504 Ubox_2 1980 2043 1.2E-20 IPR003613
SMART SM00268 actin_3 614 984 4.9E-233 IPR004000
ProSiteProfiles PS50158 Zinc finger CCHC-type profile. 321 336 9.323063 IPR001878
ProSiteProfiles PS51698 U-box domain profile. 1976 2047 29.67909 IPR003613
ProSiteProfiles PS50011 Protein kinase domain profile. 1704 1971 28.428434 IPR000719
ProSitePatterns PS00406 Actins signature 1. 662 672 - IPR004001
ProSitePatterns PS00432 Actins signature 2. 965 973 - IPR004001
ProSitePatterns PS01132 Actins and actin-related proteins signature. 713 725 - IPR020902
PRINTS PR00190 Actin signature 724 737 1.8E-52 IPR004000
PRINTS PR00190 Actin signature 749 768 1.8E-52 IPR004000
PRINTS PR00190 Actin signature 670 692 1.8E-52 IPR004000
PRINTS PR00190 Actin signature 658 669 1.8E-52 IPR004000
PRINTS PR00190 Actin signature 845 861 1.8E-52 IPR004000
PRINTS PR00190 Actin signature 635 644 1.8E-52 IPR004000
MobiDBLite mobidb-lite consensus disorder prediction 1112 1132 - -
MobiDBLite mobidb-lite consensus disorder prediction 1112 1145 - -
MobiDBLite mobidb-lite consensus disorder prediction 1 70 - -
MobiDBLite mobidb-lite consensus disorder prediction 335 351 - -
MobiDBLite mobidb-lite consensus disorder prediction 382 435 - -
MobiDBLite mobidb-lite consensus disorder prediction 494 508 - -
MobiDBLite mobidb-lite consensus disorder prediction 52 70 - -
MobiDBLite mobidb-lite consensus disorder prediction 11 25 - -
MobiDBLite mobidb-lite consensus disorder prediction 335 459 - -
MobiDBLite mobidb-lite consensus disorder prediction 474 520 - -
MobiDBLite mobidb-lite consensus disorder prediction 354 369 - -
MobiDBLite mobidb-lite consensus disorder prediction 474 493 - -
Coils Coil Coil 1110 1130 - -
Coils Coil Coil 1606 1668 - -
Coils Coil Coil 1522 1598 - -
Gene Ontology
Biological Process:
GO:0006468 (protein phosphorylation) GO:0016567 (protein ubiquitination)
Molecular Function:
GO:0003676 (nucleic acid binding) GO:0004672 (protein kinase activity) GO:0004842 (ubiquitin-protein transferase activity) GO:0005524 (ATP binding) GO:0008270 (zinc ion binding)
Best hit
Source Best Hit ID Description E-value
TAIR AT2G37620.1 actin 1. Member of the actin gene family. Expressed in mature pollen. 0
RefSeq XP_021720868.1 U-box domain-containing protein 33-like isoform X1 [Chenopodium quinoa] 0
Swiss-Prot O81221 Actin OS=Gossypium hirsutum OX=3635 PE=3 SV=1 0
TrEMBL A0A834W1D3 U-box domain-containing protein 33-like OS=Senna tora OX=362788 GN=G2W53_037621 PE=3 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Acanthaceae Avicennia marina 1 jg8343
Aizoaceae Mesembryanthemum crystallinum 1 gene_5897
Amaranthaceae Atriplex hortensis 1 Ah028043
Amaranthaceae Beta vulgaris 1 BVRB_7g173960
Amaranthaceae Salicornia bigelovii 2 Sbi_jg1771, Sbi_jg34761
Amaranthaceae Salicornia europaea 1 Seu_jg2966
Amaranthaceae Suaeda aralocaspica 1 GOSA_00003189
Amaranthaceae Suaeda glauca 2 Sgl73014, Sgl76555
Amaranthaceae Chenopodium album 3 gene:ENSEOMG00000005998, gene:ENSEOMG00000037084 ...
gene:ENSEOMG00000040659
Amaranthaceae Chenopodium quinoa 2 CQ.Regalona.r1.7AG0002760, CQ.Regalona.r1.9BG0002910
Anacardiaceae Pistacia vera 1 pistato.v30060120
Arecaceae Cocos nucifera 1 COCNU_04G015300
Arecaceae Phoenix dactylifera 1 gene-LOC103703486
Asteraceae Flaveria trinervia 1 Ftri3G07742
Casuarinaceae Casuarina equisetifolia 1 Ceq08G2185
Casuarinaceae Casuarina glauca 1 Cgl08G2344
Cymodoceaceae Cymodocea nodosa 1 gene.Cymno02g19320
Hydrocharitaceae Thalassia testudinum 2 gene.Thate01g00360, gene.Thate07g13830
Nitrariaceae Nitraria sibirica 1 evm.TU.LG09.1282
Plantaginaceae Plantago ovata 1 Pov_00002356
Plumbaginaceae Limonium bicolor 1 Lb1G06851
Poaceae Echinochloa crus-galli 1 CH09.1232
Poaceae Eleusine coracana subsp. coracana 2 gene-QOZ80_8AG0636500, gene-QOZ80_8BG0665160
Poaceae Hordeum vulgare 1 HORVU.MOREX.r3.2HG0107400.1
Poaceae Lolium multiflorum 1 gene-QYE76_038480
Poaceae Oryza coarctata 2 Oco19G000020, Oco20G000020
Poaceae Oryza sativa 1 LOC_Os10g01060.1
Poaceae Paspalum vaginatum 1 gene-BS78_04G243300
Poaceae Puccinellia tenuiflora 2 Pt_Chr0305210, Pt_Chr0305250
Poaceae Sporobolus alterniflorus 3 Chr20G000540, Chr29G002590, Chr29G002600
Poaceae Triticum dicoccoides 2 gene_TRIDC2AG008760, gene_TRIDC2BG010580
Poaceae Triticum aestivum 3 TraesCS2A02G079300.1, TraesCS2B02G094100.1 ...
TraesCS2D02G076700.1
Poaceae Zea mays 1 Zm00001eb082370_P001
Poaceae Zoysia japonica 1 nbis-gene-42544
Poaceae Zoysia macrostachya 1 Zma_g23218
Portulacaceae Portulaca oleracea 2 evm.TU.LG03.1862, evm.TU.LG14.17
Posidoniaceae Posidonia oceanica 1 gene.Posoc02g01350
Rhizophoraceae Bruguiera sexangula 1 evm.TU.Scaffold_13_RagTag.819
Rhizophoraceae Carallia pectinifolia 1 nbisL1-mrna-30196
Rhizophoraceae Ceriops tagal 1 nbisL1-mrna-19659
Rhizophoraceae Ceriops zippeliana 1 nbisL1-mrna-16208
Rhizophoraceae Kandelia candel 1 evm.TU.utg000015l.489
Rhizophoraceae Kandelia obovata 1 Maker00015439
Rhizophoraceae Rhizophora apiculata 1 nbisL1-mrna-4407
Rhizophoraceae Rhizophora mangle 1 nbisL1-mrna-20956
Salicaceae Populus euphratica 3 populus_peu02133, populus_peu02253, populus_peu35663
Solanaceae Lycium barbarum 1 gene-LOC132643562
Solanaceae Solanum chilense 1 SOLCI004543800
Solanaceae Solanum pennellii 1 gene-LOC107003136
Tamaricaceae Reaumuria soongarica 1 gene_2626
Tamaricaceae Tamarix chinensis 1 TC11G0082
Zosteraceae Zostera marina 1 Zosma01g38570.v3.1
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.