Basic Information
Locus ID:
Sgl72692
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA8 | 29409093 | 29423667 | + | Sgl72692 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.31 | 128,078.90 Da | 40.15 | 79.89 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02659 | peptidase_C19C | 206 | 534 | 6.31863E-168 | - |
| CDD | cd00121 | MATH | 65 | 188 | 8.3221E-40 | IPR002083 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 208 | 529 | 4.0E-46 | IPR001394 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 864 | 1074 | 2.2E-57 | IPR029346 |
| Pfam | PF00917 | MATH domain | 70 | 190 | 9.2E-19 | IPR002083 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 630 | 854 | 4.4E-62 | IPR024729 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 61 | 197 | 3.6E-40 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 203 | 560 | 1.86E-97 | IPR038765 |
| Gene3D | G3DSA:3.10.20.90 | - | 662 | 779 | 1.1E-40 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 61 | 204 | 6.7E-51 | IPR008974 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 205 | 533 | 1.3E-89 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 780 | 877 | 9.8E-28 | - |
| SMART | SM00061 | math_3 | 65 | 169 | 1.9E-22 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 63 | 188 | 38.391869 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 208 | 532 | 39.945908 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 209 | 224 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 448 | 465 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 42 | 63 | - | - |
| Coils | Coil | Coil | 541 | 572 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11910.2 | ubiquitin-specific protease 13. | 0 |
| RefSeq | XP_010685483.1 | ubiquitin C-terminal hydrolase 12 [Beta vulgaris subsp. vulgaris] | 0 |
| Q84WU2 | Ubiquitin C-terminal hydrolase 13 OS=Arabidopsis thaliana OX=3702 GN=UBP13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LXJ5 | ubiquitinyl hydrolase 1 OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology