Basic Information
Locus ID:
Sgl72520
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
ribonuclease H protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA8 | 25487840 | 25488988 | - | Sgl72520 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.36 | 43,960.80 Da | 42.43 | 90.42 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06222 | RNase_H_like | 256 | 376 | 5.09448E-12 | IPR044730 |
| Pfam | PF13966 | zinc-binding in reverse transcriptase | 67 | 138 | 1.4E-18 | IPR026960 |
| Pfam | PF13456 | Reverse transcriptase-like | 267 | 379 | 3.8E-10 | IPR002156 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 253 | 377 | 4.17E-5 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 252 | 380 | 2.5E-8 | IPR036397 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021857984.1 | uncharacterized protein LOC110797194 [Spinacia oleracea] | 0 |
| TrEMBL | F4NCH8 | Reverse transcriptase domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00010071, GOSA_00015070 |
| Amaranthaceae | Suaeda glauca | 45 | Sgl00660, Sgl00734, Sgl02856, Sgl04536, Sgl05678, Sgl09582 ... |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000022031 |