Basic Information
Locus ID:
Sgl72428
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA8 | 23546022 | 23553519 | + | Sgl72428 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.55 | 61,314.21 Da | 42.81 | 84.88 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 239 | 533 | 4.91799E-52 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 496 | 533 | 1.9E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 283 | 319 | 0.012 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 238 | 274 | 1.8E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 323 | 363 | 0.2 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 455 | 491 | 0.083 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 233 | 533 | 2.33E-64 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 226 | 534 | 8.5E-68 | IPR015943 |
| SMART | SM00320 | WD40_4 | 407 | 445 | 2.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 365 | 405 | 0.59 | IPR001680 |
| SMART | SM00320 | WD40_4 | 235 | 274 | 5.9E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 280 | 319 | 6.1E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 322 | 363 | 0.23 | IPR001680 |
| SMART | SM00320 | WD40_4 | 449 | 491 | 0.86 | IPR001680 |
| SMART | SM00320 | WD40_4 | 494 | 534 | 6.9E-10 | IPR001680 |
| SMART | SM00668 | ctlh | 73 | 130 | 1.6E-5 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 287 | 323 | 10.785595 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 242 | 275 | 11.978851 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 287 | 328 | 13.950525 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 242 | 275 | 9.99469 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 73 | 130 | 10.155061 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 501 | 533 | 11.391954 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 40 | 72 | 8.358164 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 501 | 533 | 13.750016 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G43920.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_021722150.1 | WD repeat-containing protein 26-like [Chenopodium quinoa] | 0 |
| Q9FND4 | WD repeat-containing protein WDS homolog OS=Arabidopsis thaliana OX=3702 GN=WDS PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LAD9 | WD repeat-containing protein 26 OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology