Basic Information
Locus ID:
Sgl72218
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
CCR4-associated factor 1 homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA8 | 19423371 | 19424318 | - | Sgl72218 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.83 | 18,355.22 Da | 41.59 | 102.90 | 0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04857 | CAF1 family ribonuclease | 75 | 159 | 2.7E-6 | IPR006941 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 2 | 48 | 2.82E-11 | IPR011009 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 41 | 161 | 9.32E-41 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 38 | 162 | 1.2E-43 | IPR036397 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1 | 36 | 5.6E-9 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 162 | 9.559545 | IPR000719 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32070.1 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein. | 0 |
| RefSeq | XP_021857067.1 | probable CCR4-associated factor 1 homolog 7 [Spinacia oleracea] | 0 |
| Q9SKZ2 | Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=CAF1-7 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9RG22 | poly(A)-specific ribonuclease OS=Spinacia oleracea OX=3562 GN=SOVF_075480 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology