Basic Information
Locus ID:
Sgl71730
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA8 | 7915235 | 7937057 | + | Sgl71730 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.39 | 96,252.14 Da | 34.66 | 82.33 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16135 | Tify domain binding domain | 455 | 504 | 2.1E-13 | IPR032308 |
| Pfam | PF00628 | PHD-finger | 521 | 563 | 3.3E-7 | IPR019787 |
| Pfam | PF16135 | Tify domain binding domain | 261 | 316 | 8.1E-13 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 517 | 565 | 1.5E-13 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 749 | 838 | 2.56E-8 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 591 | 648 | 1.38E-5 | IPR011011 |
| Gene3D | G3DSA:3.40.630.30 | - | 741 | 844 | 1.3E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 591 | 653 | 2.1E-9 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 511 | 590 | 2.8E-15 | IPR013083 |
| SMART | SM00249 | PHD_3 | 594 | 651 | 5.8E-4 | IPR001965 |
| SMART | SM00249 | PHD_3 | 521 | 562 | 1.5E-10 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 519 | 564 | 10.0329 | IPR019787 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 592 | 653 | 8.6178 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 522 | 561 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 393 | 419 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 398 | 413 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37520.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_010684186.1 | uncharacterized protein LOC104898779 isoform X2 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A0K9RIM7 | Increased DNA methylation 1 OS=Spinacia oleracea OX=3562 GN=SOVF_067560 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology