Basic Information
Locus ID:
Sgl71535
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Tudor PWWP MBT superfamily protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA8 | 5571469 | 5574017 | - | Sgl71535 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.36 | 91,509.29 Da | 44.70 | 69.33 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05162 | PWWP | 210 | 296 | 4.0932E-22 | - |
| Pfam | PF00855 | PWWP domain | 213 | 294 | 1.3E-14 | IPR000313 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 210 | 313 | 1.68E-22 | - |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 717 | 806 | 1.37E-6 | IPR035979 |
| Gene3D | G3DSA:2.30.30.140 | - | 199 | 303 | 3.6E-20 | - |
| SMART | SM00293 | PWWP_4 | 210 | 271 | 4.0E-11 | IPR000313 |
| ProSiteProfiles | PS50812 | PWWP domain profile. | 212 | 273 | 12.610832 | IPR000313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 693 | 722 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 705 | 719 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 161 | 188 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 423 | 458 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 460 | 498 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 423 | 500 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 802 | 832 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 807 | 822 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 163 | 182 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02950.1 | Tudor/PWWP/MBT superfamily protein. | 0 |
| RefSeq | XP_021865134.1 | uncharacterized protein LOC110803906 [Spinacia oleracea] | 0 |
| Q9LYZ0 | PWWP domain-containing protein 5 OS=Arabidopsis thaliana OX=3702 GN=PDP5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RXW3 | PWWP domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_016280 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology