Basic Information
Locus ID:
Sgl71108
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Poly(A) polymerase central domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA8 | 1978261 | 1983246 | - | Sgl71108 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.09 | 71,487.39 Da | 45.83 | 85.78 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 54 | 168 | 3.2947E-27 | - |
| Pfam | PF04928 | Poly(A) polymerase central domain | 15 | 361 | 1.3E-99 | IPR007012 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 363 | 419 | 7.0E-12 | IPR007010 |
| Pfam | PF01909 | Nucleotidyltransferase domain | 88 | 165 | 1.3E-8 | IPR002934 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 211 | 361 | 2.15E-59 | - |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 13 | 207 | 2.94E-42 | IPR043519 |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 363 | 494 | 3.14E-27 | IPR011068 |
| Gene3D | G3DSA:1.10.1410.10 | - | 15 | 359 | 3.5E-148 | - |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 363 | 483 | 2.2E-21 | - |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 47 | 204 | 3.5E-148 | IPR043519 |
| PIRSF | PIRSF018425 | PolyA_polymerase | 2 | 605 | 1.9E-197 | IPR014492 |
| Coils | Coil | Coil | 574 | 594 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17980.1 | poly(A) polymerase 1. Encodes a poly(A) polymerase. Located in the nucleus. | 0 |
| RefSeq | XP_011009627.1 | PREDICTED: nuclear poly(A) polymerase 1 [Populus euphratica] | 0 |
| Q9LMT2 | Nuclear poly(A) polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=PAPS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9A937 | polynucleotide adenylyltransferase (Fragment) OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology