Basic Information
Locus ID:
Sgl71019
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
chitin elicitor receptor kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA8 | 1238122 | 1244670 | - | Sgl71019 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.70 | 118,730.08 Da | 37.24 | 97.35 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17177 | Pentacotripeptide-repeat region of PRORP | 725 | 851 | 1.1E-7 | IPR033443 |
| Pfam | PF01476 | LysM domain | 39 | 87 | 0.037 | IPR018392 |
| Pfam | PF13041 | PPR repeat family | 901 | 949 | 3.4E-14 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 659 | 684 | 0.086 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 869 | 899 | 0.2 | IPR002885 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 345 | 610 | 1.1E-47 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 322 | 611 | 8.63E-76 | IPR011009 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 629 | 778 | 7.2E-17 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 894 | 1063 | 4.7E-23 | IPR011990 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 413 | 625 | 3.1E-56 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 779 | 893 | 1.2E-22 | IPR011990 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 314 | 412 | 3.3E-24 | - |
| SMART | SM00220 | serkin_6 | 342 | 613 | 1.2E-43 | IPR000719 |
| SMART | SM00257 | LysM_2 | 106 | 152 | 2.5 | IPR018392 |
| SMART | SM00257 | LysM_2 | 38 | 87 | 0.01 | IPR018392 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 835 | 868 | 0.0022 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 905 | 937 | 4.6E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 726 | 758 | 1.3E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 869 | 902 | 2.0E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 802 | 832 | 6.8E-5 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 723 | 757 | 10.281757 | IPR002885 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 342 | 614 | 39.057201 | IPR000719 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 758 | 796 | 8.61564 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 937 | 971 | 10.237912 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 832 | 866 | 9.284279 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 902 | 936 | 12.879585 | IPR002885 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 37 | 86 | 8.942929 | IPR018392 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 867 | 901 | 10.369448 | IPR002885 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 348 | 370 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 457 | 469 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G21630.1 | chitin elicitor receptor kinase 1. LysM receptor-like kinase. Essential in the perception and transduction of the chitin oligosaccharide elicitor. Involved in chitin-mediated plant innate immunity. Located in the plasma membrane. | 0 |
| RefSeq | XP_021850694.1 | lysM domain receptor-like kinase 3 [Spinacia oleracea] | 0 |
| Q6UD73 | LysM domain receptor-like kinase 3 OS=Medicago truncatula OX=3880 GN=LYK3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RWX1 | Protein kinase domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_024950 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology