halophFGD

Basic Information

Locus ID: Sgl70986

Species & Taxonomic ID: Suaeda glauca & 397272

Genome Assembly: GWHEQCX00000000

Description: sorting nexin

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chrA8	994043	1001667	+	Sgl70986

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.03	79,017.60 Da	44.48	71.27	-0.69

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd07596	BAR_SNX	475	685	4.37303E-50	-
Pfam	PF03732	Retrotransposon gag protein	160	249	1.3E-11	IPR005162
Pfam	PF09325	Vps5 C terminal like	470	685	3.0E-22	IPR015404
SUPERFAMILY	SSF103657	BAR/IMD domain-like	478	687	5.76E-11	IPR027267
Gene3D	G3DSA:1.20.1270.60	Arfaptin homology (AH) domain/BAR domain	472	691	1.0E-61	IPR027267
MobiDBLite	mobidb-lite	consensus disorder prediction	318	354	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	93	118	-	-
Coils	Coil	Coil	49	83	-	-
Coils	Coil	Coil	608	635	-	-
Coils	Coil	Coil	2	36	-	-

KEGG Pathway

KO Term:

K17917 (sorting nexin-1/2)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G06140.1	sorting nexin 1. Homolog of yeast retromer subunit VPS5. Part of a retromer-like protein complex involved in endosome to lysosome protein transport. In roots it co-localizes with the PIN2 auxin efflux carrier. Involved in endocytic sorting of membrane proteins including PIN2, BOR1 and BRI1.
RefSeq	XP_021851798.1	sorting nexin 1 [Spinacia oleracea]
Swiss-Prot	Q9FG38	Sorting nexin 1 OS=Arabidopsis thaliana OX=3702 GN=SNX1 PE=1 SV=1
TrEMBL	A0A0K9QM41	PX domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_169060 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	7	jg11518, jg15914, jg15947, jg2611, jg2789, jg37640, jg39520
Amaranthaceae	Atriplex hortensis	10	Ah002644, Ah007485, Ah012876, Ah012877, Ah015878, Ah025174 ... Ah031387, Ah036500, Ah037900, Ah038708
Amaranthaceae	Salicornia bigelovii	28	Sbi_jg14626, Sbi_jg14627, Sbi_jg16775, Sbi_jg18944 ... Sbi_jg23452, Sbi_jg23845, Sbi_jg28481, Sbi_jg28755, Sbi_jg35212, Sbi_jg35342, Sbi_jg35388, Sbi_jg38906, Sbi_jg4290, Sbi_jg45158, Sbi_jg45766, Sbi_jg47459, Sbi_jg47997, Sbi_jg51751, Sbi_jg52720, Sbi_jg54393, Sbi_jg54699, Sbi_jg58440, Sbi_jg58544, Sbi_jg6515, Sbi_jg8608, Sbi_jg958, Sbi_jg9602, Sbi_m1-g29292
Amaranthaceae	Salicornia europaea	4	Seu_jg1308, Seu_jg21422, Seu_jg2409, Seu_jg3203
Amaranthaceae	Suaeda aralocaspica	57	GOSA_00001376, GOSA_00001731, GOSA_00001999, GOSA_00002725 ... GOSA_00003047, GOSA_00003963, GOSA_00004377, GOSA_00004440, GOSA_00006846, GOSA_00009684, GOSA_00009685, GOSA_00010491, GOSA_00010492, GOSA_00011520, GOSA_00012366, GOSA_00012415, GOSA_00012642, GOSA_00013638, GOSA_00014663, GOSA_00014678, GOSA_00014679, GOSA_00015056, GOSA_00016817, GOSA_00017624, GOSA_00017681, GOSA_00017743, GOSA_00019115, GOSA_00019129, GOSA_00019328, GOSA_00019330, GOSA_00019331, GOSA_00019332, GOSA_00019662, GOSA_00020155, GOSA_00020566, GOSA_00020860, GOSA_00021133, GOSA_00021492, GOSA_00021539, GOSA_00022630, GOSA_00023455, GOSA_00023456, GOSA_00024070, GOSA_00024624, GOSA_00024980, GOSA_00026144, GOSA_00026145, GOSA_00026329, GOSA_00026689, GOSA_00026696, GOSA_00026866, GOSA_00027342, GOSA_00028010, GOSA_00028353, GOSA_00028610, GOSA_00028706, GOSA_00029105
Amaranthaceae	Suaeda glauca	87	Sgl01167, Sgl02508, Sgl02896, Sgl04866, Sgl05756, Sgl06255 ... Sgl06337, Sgl07662, Sgl08013, Sgl09916, Sgl11001, Sgl12614, Sgl12812, Sgl14804, Sgl14811, Sgl14963, Sgl18059, Sgl19974, Sgl20103, Sgl20855, Sgl21436, Sgl22261, Sgl22297, Sgl22990, Sgl24533, Sgl27539, Sgl28101, Sgl29698, Sgl31417, Sgl32178, Sgl32806, Sgl33940, Sgl36099, Sgl36149, Sgl36730, Sgl37472, Sgl38088, Sgl41400, Sgl41447, Sgl41617, Sgl42026, Sgl42358, Sgl44408, Sgl45104, Sgl46813, Sgl47478, Sgl47755, Sgl49174, Sgl51275, Sgl52087, Sgl52240, Sgl52761, Sgl53208, Sgl53376, Sgl54191, Sgl54494, Sgl55639, Sgl57613, Sgl58026, Sgl58472, Sgl58642, Sgl59827, Sgl62027, Sgl62373, Sgl62976, Sgl63462, Sgl64677, Sgl65450, Sgl66276, Sgl66587, Sgl66650, Sgl67941, Sgl69133, Sgl69807, Sgl70986, Sgl71485, Sgl71490, Sgl71503, Sgl76509, Sgl78225, Sgl78617, Sgl78857, Sgl78858, Sgl80716, Sgl81094, Sgl81316, Sgl81317
Amaranthaceae	Chenopodium album	14	gene:ENSEOMG00000003345, gene:ENSEOMG00000006224 ... gene:ENSEOMG00000010384, gene:ENSEOMG00000014761, gene:ENSEOMG00000018132, gene:ENSEOMG00000019705, gene:ENSEOMG00000022348, gene:ENSEOMG00000035668, gene:ENSEOMG00000038487, gene:ENSEOMG00000040288, gene:ENSEOMG00000042834, gene:ENSEOMG00000046274, gene:ENSEOMG00000048971, gene:ENSEOMG00000051352
Amaranthaceae	Chenopodium quinoa	30	CQ.Regalona.r1.1AG0000090, CQ.Regalona.r1.1AG0018420 ... CQ.Regalona.r1.1AG0020270, CQ.Regalona.r1.1AG0021250, CQ.Regalona.r1.1BG0005530, CQ.Regalona.r1.1BG0006410, CQ.Regalona.r1.3AG0003580, CQ.Regalona.r1.3BG0000800, CQ.Regalona.r1.3BG0008130, CQ.Regalona.r1.4AG0009750, CQ.Regalona.r1.4BG0000150, CQ.Regalona.r1.5AG0014370, CQ.Regalona.r1.5BG0002980, CQ.Regalona.r1.5BG0014520, CQ.Regalona.r1.5BG0014930, CQ.Regalona.r1.5BG0028160, CQ.Regalona.r1.6AG0009700, CQ.Regalona.r1.7AG0017600, CQ.Regalona.r1.7AG0017610, CQ.Regalona.r1.7BG0004050, CQ.Regalona.r1.7BG0004060, CQ.Regalona.r1.7BG0018480, CQ.Regalona.r1.7BG0018490, CQ.Regalona.r1.7BG0018990, CQ.Regalona.r1.7BG0020040, CQ.Regalona.r1.7BG0026100, CQ.Regalona.r1.8AG0023480, CQ.Regalona.r1.8BG0000880, CQ.Regalona.r1.8BG0012480, CQ.Regalona.r1.9BG0013980
Arecaceae	Phoenix dactylifera	4	gene-LOC103710315, gene-LOC120104102, gene-LOC120106523 ... gene-LOC120112556
Asteraceae	Flaveria trinervia	18	Ftri10G25997, Ftri11G32218, Ftri12G00173, Ftri12G12672 ... Ftri12G26037, Ftri12G33506, Ftri15G01519, Ftri15G02640, Ftri17G13090, Ftri18G30690, Ftri1G00129, Ftri3G20664, Ftri3G23590, Ftri4G15401, Ftri7G02791, Ftri7G19095, Ftri9G31822, FtriNA15286
Brassicaceae	Arabidopsis thaliana	8	AT1G53705.2, AT1G67020.1, AT2G35080.2, AT3G29750.1 ... AT3G30770.1, AT3G42723.1, AT5G25920.1, AT5G27800.1
Brassicaceae	Eutrema salsugineum	7	Thhalv10000592m.g.v1.0, Thhalv10002674m.g.v1.0 ... Thhalv10003066m.g.v1.0, Thhalv10012409m.g.v1.0, Thhalv10017833m.g.v1.0, Thhalv10026804m.g.v1.0, Thhalv10027465m.g.v1.0
Brassicaceae	Schrenkiella parvula	39	Sp1g30880.v2.2, Sp1g31410.v2.2, Sp1g32560.v2.2 ... Sp2g06690.v2.2, Sp3g18020.v2.2, Sp3g22620.v2.2, Sp3g25830.v2.2, Sp3g27120.v2.2, Sp3g28500.v2.2, Sp3g28830.v2.2, Sp4g02590.v2.2, Sp4g05780.v2.2, Sp4g07510.v2.2, Sp4g07980.v2.2, Sp4g08930.v2.2, Sp4g10160.v2.2, Sp5g16940.v2.2, Sp5g17370.v2.2, Sp5g17430.v2.2, Sp5g17490.v2.2, Sp6g10530.v2.2, Sp6g11810.v2.2, Sp6g12040.v2.2, Sp6g13440.v2.2, Sp6g16040.v2.2, Sp6g23650.v2.2, Sp7g03930.v2.2, Sp7g06650.v2.2, Sp7g07830.v2.2, Sp7g09030.v2.2, Sp7g09930.v2.2, Sp7g10840.v2.2, Sp7g21440.v2.2, SpUn0001_0220.v2.2, SpUn0004_0150.v2.2, SpUn0005_0210.v2.2, SpUn0008_0090.v2.2, SpUn0027_0100.v2.2, SpUn0035_0010.v2.2
Brassicaceae	Brassica nigra	32	BniB01g016960.2N, BniB01g018450.2N, BniB01g018580.2N ... BniB01g025300.2N, BniB01g029480.2N, BniB01g032730.2N, BniB02g039280.2N, BniB02g043760.2N, BniB03g051300.2N, BniB03g061120.2N, BniB04g026520.2N, BniB04g044230.2N, BniB04g053040.2N, BniB04g056530.2N, BniB04g059710.2N, BniB04p000080.2N, BniB05g050090.2N, BniB05g051380.2N, BniB05g052040.2N, BniB05g056550.2N, BniB05g057300.2N, BniB05g064150.2N, BniB05g064160.2N, BniB06g028730.2N, BniB06g035800.2N, BniB06g038600.2N, BniB06g038610.2N, BniB06g039610.2N, BniB06g039620.2N, BniB06g050920.2N, BniB08g051620.2N, BniB08g052950.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq09G0484
Casuarinaceae	Casuarina glauca	1	Cgl09G0521
Cymodoceaceae	Cymodocea nodosa	4	gene.Cymno02g02650, gene.Cymno02g18900, gene.Cymno04g10020 ... gene.Cymno13g04970
Hydrocharitaceae	Thalassia testudinum	109	gene.Thate01g02400, gene.Thate01g02410, gene.Thate01g09950 ... gene.Thate01g10960, gene.Thate01g10970, gene.Thate01g11280, gene.Thate01g11290, gene.Thate01g12740, gene.Thate01g13110, gene.Thate01g13120, gene.Thate01g13140, gene.Thate01g13750, gene.Thate01g14150, gene.Thate01g15260, gene.Thate01g15550, gene.Thate01g16270, gene.Thate01g16280, gene.Thate01g16430, gene.Thate01g17730, gene.Thate01g23780, gene.Thate01g28130, gene.Thate01g33760, gene.Thate02g05040, gene.Thate02g05050, gene.Thate02g06550, gene.Thate02g06560, gene.Thate02g06570, gene.Thate02g09700, gene.Thate02g09710, gene.Thate02g15930, gene.Thate02g15940, gene.Thate02g19980, gene.Thate02g19990, gene.Thate02g20380, gene.Thate02g20390, gene.Thate02g22280, gene.Thate02g25570, gene.Thate02g25580, gene.Thate02g26810, gene.Thate02g26820, gene.Thate02g28880, gene.Thate02g31240, gene.Thate02g41620, gene.Thate02g41630, gene.Thate03g03100, gene.Thate03g11790, gene.Thate03g11800, gene.Thate03g12300, gene.Thate03g14320, gene.Thate03g16080, gene.Thate03g16120, gene.Thate04g01420, gene.Thate04g01430, gene.Thate04g07080, gene.Thate04g12250, gene.Thate04g14620, gene.Thate04g15660, gene.Thate04g15720, gene.Thate04g16550, gene.Thate04g19010, gene.Thate04g19020, gene.Thate04g27930, gene.Thate05g00150, gene.Thate05g00160, gene.Thate05g01180, gene.Thate05g09820, gene.Thate05g13830, gene.Thate05g17630, gene.Thate05g17700, gene.Thate05g17710, gene.Thate05g18890, gene.Thate05g21850, gene.Thate05g27590, gene.Thate06g00650, gene.Thate06g05220, gene.Thate06g08260, gene.Thate06g11920, gene.Thate06g13560, gene.Thate06g15190, gene.Thate06g15600, gene.Thate06g16120, gene.Thate06g20670, gene.Thate06g21230, gene.Thate06g21440, gene.Thate06g21450, gene.Thate06g22200, gene.Thate07g11690, gene.Thate07g12200, gene.Thate07g14280, gene.Thate07g14330, gene.Thate07g14340, gene.Thate07g17680, gene.Thate08g05590, gene.Thate08g06810, gene.Thate08g13700, gene.Thate08g13710, gene.Thate08g14330, gene.Thate08g14340, gene.Thate08g14350, gene.Thate08g16290, gene.Thate08g18420, gene.Thate08g23130, gene.Thate09g02810, gene.Thate09g04220, gene.Thate09g04230, gene.Thate09g07080, gene.Thate09g08820, gene.Thate09g18980, gene.Thate09g20270
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-11530, nbisL1-mrna-12242, nbisL1-mrna-1794
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG12.1140
Plantaginaceae	Plantago ovata	15	Pov_00011440, Pov_00019586, Pov_00019587, Pov_00019670 ... Pov_00029498, Pov_00030122, Pov_00030150, Pov_00032673, Pov_00034009, Pov_00034010, Pov_00036060, Pov_00038480, Pov_00039771, Pov_00040607, Pov_00040608
Plumbaginaceae	Limonium bicolor	15	Lb1G04902, Lb2G11431, Lb2G11484, Lb2G11573, Lb2G11631 ... Lb3G16297, Lb3G17027, Lb3G18379, Lb4G22794, Lb4G23045, Lb5G27416, Lb5G29087, Lb6G31361, Lb7G34024, Lb8G35603
Poaceae	Echinochloa crus-galli	4	AH08.1412, BH07.1947, CH02.3026, CH08.1245
Poaceae	Eleusine coracana subsp. coracana	14	gene-QOZ80_2BG0179770, gene-QOZ80_3AG0208590 ... gene-QOZ80_3AG0218760, gene-QOZ80_3AG0226640, gene-QOZ80_3BG0261060, gene-QOZ80_4AG0325910, gene-QOZ80_4BG0348290, gene-QOZ80_5BG0422000, gene-QOZ80_6AG0523620, gene-QOZ80_7AG0564790, gene-QOZ80_7BG0591530, gene-QOZ80_8BG0650860, gene-QOZ80_8BG0663410, gene-QOZ80_9BG0707950
Poaceae	Lolium multiflorum	32	gene-QYE76_001004, gene-QYE76_002268, gene-QYE76_003659 ... gene-QYE76_004459, gene-QYE76_006986, gene-QYE76_007550, gene-QYE76_009210, gene-QYE76_011817, gene-QYE76_013461, gene-QYE76_013545, gene-QYE76_018006, gene-QYE76_020129, gene-QYE76_021395, gene-QYE76_025864, gene-QYE76_031603, gene-QYE76_038306, gene-QYE76_039208, gene-QYE76_040711, gene-QYE76_041583, gene-QYE76_041832, gene-QYE76_046509, gene-QYE76_057892, gene-QYE76_060604, gene-QYE76_063253, gene-QYE76_064042, gene-QYE76_067234, gene-QYE76_067396, gene-QYE76_067564, gene-QYE76_068263, gene-QYE76_068522, gene-QYE76_069472, gene-QYE76_069846
Poaceae	Oryza coarctata	8	Oco01G010960, Oco03G010510, Oco06G011400, Oco08G001930 ... Oco10G002880, Oco10G012400, Oco14G002840, Oco17G002170
Poaceae	Paspalum vaginatum	16	gene-BS78_01G033400, gene-BS78_01G181300, gene-BS78_K111500 ... gene-BS78_02G156800, gene-BS78_03G142700, gene-BS78_03G167300, gene-BS78_03G205500, gene-BS78_04G054700, gene-BS78_05G134100, gene-BS78_05G196300, gene-BS78_08G097400, gene-BS78_08G100400, gene-BS78_10G126800, gene-BS78_10G134600, gene-BS78_K226700, gene-BS78_K244400
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0302628, Pt_Chr0500126
Poaceae	Sporobolus alterniflorus	8	Chr01G005370, Chr03G003900, Chr09G008420, Chr09G017310 ... Chr09G019430, Chr17G008550, Chr21G007240, Chr26G014520
Poaceae	Triticum dicoccoides	2	gene_TRIDC1AG029020, gene_TRIDC6AG041100
Poaceae	Zea mays	1	Zm00001eb090740_P001
Poaceae	Zoysia japonica	45	nbis-gene-10709, nbis-gene-12442, nbis-gene-12530 ... nbis-gene-13134, nbis-gene-17046, nbis-gene-17223, nbis-gene-21471, nbis-gene-25398, nbis-gene-26620, nbis-gene-27390, nbis-gene-2913, nbis-gene-30687, nbis-gene-34556, nbis-gene-36045, nbis-gene-36046, nbis-gene-36611, nbis-gene-43302, nbis-gene-44112, nbis-gene-45832, nbis-gene-46314, nbis-gene-47243, nbis-gene-48343, nbis-gene-48442, nbis-gene-48444, nbis-gene-49014, nbis-gene-50848, nbis-gene-51536, nbis-gene-52713, nbis-gene-53200, nbis-gene-54942, nbis-gene-56460, nbis-gene-56799, nbis-gene-57696, nbis-gene-58026, nbis-gene-58083, nbis-gene-58129, nbis-gene-58211, nbis-gene-58233, nbis-gene-58760, nbis-gene-58788, nbis-gene-58837, nbis-gene-59053, nbis-gene-59089, nbis-gene-59268, nbis-gene-6372
Posidoniaceae	Posidonia oceanica	62	gene.Posoc01g01930, gene.Posoc01g05940, gene.Posoc01g10940 ... gene.Posoc01g13640, gene.Posoc01g18980, gene.Posoc01g22460, gene.Posoc01g24050, gene.Posoc01g24060, gene.Posoc01g27540, gene.Posoc01g39750, gene.Posoc02g04650, gene.Posoc02g05120, gene.Posoc02g08010, gene.Posoc02g08020, gene.Posoc02g12700, gene.Posoc02g15840, gene.Posoc02g17310, gene.Posoc02g17340, gene.Posoc02g18300, gene.Posoc02g21970, gene.Posoc02g22060, gene.Posoc02g22070, gene.Posoc02g33460, gene.Posoc03g07830, gene.Posoc03g09910, gene.Posoc03g12050, gene.Posoc03g15000, gene.Posoc03g15140, gene.Posoc03g15160, gene.Posoc03g22740, gene.Posoc03g29140, gene.Posoc04g09130, gene.Posoc04g09610, gene.Posoc04g09620, gene.Posoc04g09630, gene.Posoc04g15770, gene.Posoc04g18760, gene.Posoc04g20090, gene.Posoc05g01380, gene.Posoc05g01390, gene.Posoc05g05820, gene.Posoc05g10820, gene.Posoc05g16630, gene.Posoc05g21640, gene.Posoc05g22990, gene.Posoc06g00530, gene.Posoc06g05500, gene.Posoc07g02180, gene.Posoc07g04740, gene.Posoc07g08920, gene.Posoc07g10970, gene.Posoc07g12750, gene.Posoc07g15860, gene.Posoc08g08150, gene.Posoc09g00330, gene.Posoc09g07850, gene.Posoc09g07860, gene.Posoc09g10920, gene.Posoc09g11030, gene.Posoc09g11040, gene.Posoc10g06020, gene.Posoc10g06090
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.45919.5, evm.TU.Scaffold_2_RagTag.1316 ... evm.TU.Scaffold_4_RagTag.1315, evm.TU.Scaffold_7_RagTag.600
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-11716, nbisL1-mrna-15225, nbisL1-mrna-19010
Rhizophoraceae	Ceriops tagal	6	nbisL1-mrna-15272, nbisL1-mrna-16402, nbisL1-mrna-20596 ... nbisL1-mrna-6648, nbisL1-mrna-7073, nbisL1-mrna-8044
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-21799
Rhizophoraceae	Kandelia candel	1	add.evm.TU.utg000019l.282
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-21020, nbisL1-mrna-22786
Solanaceae	Lycium barbarum	2	gene-LOC132603123, gene-LOC132641461
Solanaceae	Solanum pennellii	2	gene-LOC107005014, gene-LOC114078588
Tamaricaceae	Reaumuria soongarica	3	STRG.29258_chr10_-, STRG.6804_chr04_-, gene_3625
Tamaricaceae	Tamarix chinensis	2	TC05G2488, TC10G2433
Zosteraceae	Zostera marina	32	Zosma01g06400.v3.1, Zosma01g14340.v3.1, Zosma01g19930.v3.1 ... Zosma01g20750.v3.1, Zosma01g26960.v3.1, Zosma01g34360.v3.1, Zosma02g01680.v3.1, Zosma02g01710.v3.1, Zosma02g07930.v3.1, Zosma02g07950.v3.1, Zosma02g11130.v3.1, Zosma02g14410.v3.1, Zosma02g14420.v3.1, Zosma03g07420.v3.1, Zosma03g08290.v3.1, Zosma03g08480.v3.1, Zosma03g12730.v3.1, Zosma03g18570.v3.1, Zosma04g06200.v3.1, Zosma04g10220.v3.1, Zosma04g12740.v3.1, Zosma04g15300.v3.1, Zosma05g16270.v3.1, Zosma05g16730.v3.1, Zosma05g19140.v3.1, Zosma05g19180.v3.1, Zosma05g28910.v3.1, Zosma06g12470.v3.1, Zosma06g16830.v3.1, Zosma06g18670.v3.1, Zosma06g26660.v3.1, Zosma06g27050.v3.1