Basic Information
Locus ID:
Sgl70313
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Ribonuclease H protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB7 | 46545394 | 46555516 | - | Sgl70313 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.60 | 257,028.34 Da | 43.35 | 82.81 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06222 | RNase_H_like | 1704 | 1824 | 5.32795E-25 | IPR044730 |
| CDD | cd01650 | RT_nLTR_like | 991 | 1259 | 9.21347E-53 | - |
| Pfam | PF00646 | F-box domain | 1885 | 1923 | 2.1E-9 | IPR001810 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 997 | 1239 | 1.6E-39 | IPR000477 |
| Pfam | PF13456 | Reverse transcriptase-like | 1705 | 1826 | 2.2E-17 | IPR002156 |
| Pfam | PF03372 | Endonuclease/Exonuclease/phosphatase family | 502 | 723 | 1.3E-8 | IPR005135 |
| Pfam | PF14111 | Domain of unknown function (DUF4283) | 4 | 51 | 4.8E-8 | IPR025558 |
| Pfam | PF13966 | zinc-binding in reverse transcriptase | 1518 | 1601 | 2.8E-14 | IPR026960 |
| Pfam | PF07734 | F-box associated | 2114 | 2218 | 5.3E-6 | IPR006527 |
| SUPERFAMILY | SSF56219 | DNase I-like | 498 | 728 | 6.02E-32 | IPR036691 |
| SUPERFAMILY | SSF81383 | F-box domain | 1884 | 1929 | 4.19E-12 | IPR036047 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 1703 | 1828 | 1.19E-11 | IPR012337 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1884 | 1922 | 2.1E-7 | - |
| Gene3D | G3DSA:3.60.10.10 | Endonuclease/exonuclease/phosphatase | 497 | 729 | 8.6E-33 | IPR036691 |
| Gene3D | G3DSA:3.30.420.10 | - | 1702 | 1830 | 3.2E-12 | IPR036397 |
| SMART | SM00256 | fbox_2 | 1886 | 1926 | 4.5E-10 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 2024 | 2224 | 4.6E-23 | IPR017451 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 978 | 1259 | 15.640287 | IPR000477 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1880 | 1931 | 11.272594 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 98 | 125 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 196 | 266 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 400 | 420 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 283 | 426 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 346 | 360 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 309 | 343 | - | - |
| Coils | Coil | Coil | 820 | 840 | - | - |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16210.1 | F-box family protein. | 0 |
| RefSeq | XP_048497307.1 | uncharacterized protein LOC104885230 [Beta vulgaris subsp. vulgaris] | 0 |
| P16423 | Retrovirus-related Pol polyprotein from type-2 retrotransposable element R2DM OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1 | 0 | |
| TrEMBL | A0A2N9ISI7 | CCHC-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS55207 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||