Basic Information
Locus ID:
Sgl70193
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB7 | 45186912 | 45192814 | + | Sgl70193 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.42 | 166,017.92 Da | 37.04 | 108.19 | 0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03250 | ABCC_MRP_domain1 | 622 | 822 | 2.28654E-102 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 306 | 593 | 2.21412E-78 | IPR044746 |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 927 | 1221 | 4.30721E-84 | IPR044726 |
| Pfam | PF00005 | ABC transporter | 640 | 774 | 1.8E-19 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 929 | 1170 | 6.2E-37 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 307 | 571 | 3.7E-17 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1286 | 1391 | 4.2E-10 | IPR003439 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 299 | 598 | 1.07E-25 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 621 | 842 | 3.01E-55 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1237 | 1457 | 3.12E-46 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 914 | 1217 | 1.15E-51 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 295 | 600 | 3.1E-39 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 888 | 1227 | 2.3E-62 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1228 | 1461 | 6.3E-58 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 601 | 861 | 1.0E-73 | IPR027417 |
| SMART | SM00382 | AAA_5 | 649 | 822 | 2.7E-15 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 929 | 1209 | 36.65519 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 622 | 845 | 22.802561 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 305 | 585 | 26.621502 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1246 | 1460 | 13.732313 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 747 | 761 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 887 | 901 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 875 | 901 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_021736749.1 | ABC transporter C family member 3-like [Chenopodium quinoa] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803M645 | ABC-type xenobiotic transporter OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology