Basic Information
Locus ID:
Sgl70032
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Ribonuclease H protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB7 | 43440618 | 43444621 | - | Sgl70032 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.05 | 118,364.90 Da | 44.20 | 91.38 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06222 | RNase_H_like | 911 | 1032 | 1.60542E-17 | IPR044730 |
| Pfam | PF13966 | zinc-binding in reverse transcriptase | 708 | 794 | 3.9E-20 | IPR026960 |
| Pfam | PF13456 | Reverse transcriptase-like | 913 | 1033 | 4.1E-14 | IPR002156 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 907 | 1032 | 7.97E-5 | IPR012337 |
| SUPERFAMILY | SSF56219 | DNase I-like | 16 | 220 | 4.5E-18 | IPR036691 |
| Gene3D | G3DSA:3.60.10.10 | Endonuclease/exonuclease/phosphatase | 2 | 220 | 8.2E-18 | IPR036691 |
| Gene3D | G3DSA:3.30.420.10 | - | 908 | 1036 | 9.2E-10 | IPR036397 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_048498238.1 | uncharacterized protein LOC125496736 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A0K9QRM5 | RNase H domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_148770 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00010071, GOSA_00015070 |
| Amaranthaceae | Suaeda glauca | 45 | Sgl00660, Sgl00734, Sgl02856, Sgl04536, Sgl05678, Sgl09582 ... |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000022031 |