Basic Information
Locus ID:
Sgl69469
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Retroviral aspartyl protease
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB7 | 34487484 | 34488707 | - | Sgl69469 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.09 | 43,148.39 Da | 40.10 | 67.42 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 225 | 290 | 3.70046E-7 | - |
| CDD | cd01647 | RT_LTR | 292 | 365 | 3.59439E-27 | - |
| Pfam | PF08284 | Retroviral aspartyl protease | 238 | 292 | 4.6E-10 | - |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 292 | 361 | 3.6E-13 | IPR000477 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 292 | 365 | 3.89E-21 | IPR043502 |
| Gene3D | G3DSA:3.30.70.270 | - | 266 | 373 | 1.5E-25 | IPR043128 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 104 | 119 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 168 | 189 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 85 | 123 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 169 | 189 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021738194.1 | uncharacterized protein LOC110704684 [Chenopodium quinoa] | 0 |
| Q89703 | Putative enzymatic polyprotein OS=Cassava vein mosaic virus OX=38062 GN=ORF 3 PE=3 SV=1 | 0 | |
| TrEMBL | A2I5E5 | RNA-directed DNA polymerase OS=Beta vulgaris OX=161934 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Beta vulgaris | 2 | BVRB_4g086710, BVRB_8g189320 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25647, Sbi_jg35810 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg1509, Seu_jg7247 |
| Amaranthaceae | Suaeda glauca | 30 | Sgl05059, Sgl08276, Sgl09509, Sgl10099, Sgl13129, Sgl14136 ... |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000052022 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.3AG0010420 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb5G26473, Lb8G36574 |