Basic Information
Locus ID:
Sgl68967
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
calcium-dependent protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB7 | 23595135 | 23597057 | - | Sgl68967 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.72 | 22,024.00 Da | 32.34 | 88.04 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 141 | 186 | 1.17664E-8 | IPR002048 |
| CDD | cd00051 | EFh | 69 | 128 | 4.52714E-17 | IPR002048 |
| Pfam | PF13405 | EF-hand domain | 141 | 168 | 2.3E-8 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 69 | 129 | 6.4E-12 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 60 | 186 | 1.46E-38 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 7 | 188 | 7.8E-53 | - |
| SMART | SM00054 | efh_1 | 68 | 96 | 5.3E-7 | IPR002048 |
| SMART | SM00054 | efh_1 | 104 | 132 | 0.0061 | IPR002048 |
| SMART | SM00054 | efh_1 | 140 | 168 | 0.015 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 136 | 171 | 15.210791 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 100 | 135 | 11.612284 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 64 | 99 | 15.266581 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 77 | 89 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 113 | 125 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 149 | 161 | - | IPR018247 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G09570.1 | calcium-dependent protein kinase 4. Encodes a member of Calcium Dependent Protein Kinase (CDPK) gene family.Positive regulator of ABA signaling. Phosphorylates ABA responsive transcription factors ABF1 and ABF4. | 0 |
| RefSeq | XP_021767245.1 | calcium-dependent protein kinase 11-like [Chenopodium quinoa] | 0 |
| P28583 | Calcium-dependent protein kinase SK5 OS=Glycine max OX=3847 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RM78 | Calcium-dependent protein kinase 11-like OS=Spinacia oleracea OX=3562 GN=SOVF_056030 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 2 | Ah033093, Ah036874 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl68967 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004643, gene:ENSEOMG00000006606 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.3BG0009830, CQ.Regalona.r1.7BG0018650 ... |
| Apiaceae | Apium graveolens | 2 | Ag2G01810, Ag8G00088 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1311.V1.1 |
| Brassicaceae | Brassica nigra | 2 | BniB01g043470.2N, BniB03g056960.2N |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-1650 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.915 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00032026 |
| Poaceae | Echinochloa crus-galli | 1 | CH04.446 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr09G003830 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G027700 |
| Poaceae | Zea mays | 2 | Zm00001eb015740_P001, Zm00001eb168390_P001 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-18442, nbisL1-mrna-18491 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5501 |
| Zosteraceae | Zostera marina | 1 | Zosma03g22750.v3.1 |