Basic Information
Locus ID:
Sgl68153
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB7 | 11321556 | 11333310 | - | Sgl68153 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.66 | 99,798.18 Da | 40.36 | 90.35 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17939 | DEADc_EIF4A | 513 | 710 | 5.77186E-129 | - |
| CDD | cd18787 | SF2_C_DEAD | 282 | 412 | 3.1076E-57 | - |
| CDD | cd18787 | SF2_C_DEAD | 721 | 851 | 2.8117E-57 | - |
| CDD | cd17939 | DEADc_EIF4A | 74 | 271 | 1.19412E-126 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 533 | 694 | 2.4E-40 | IPR011545 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 94 | 255 | 3.2E-41 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 295 | 403 | 4.1E-28 | IPR001650 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 734 | 842 | 4.1E-28 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 577 | 862 | 1.94E-73 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 138 | 423 | 2.4E-74 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 498 | 716 | 2.8E-67 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 278 | 440 | 2.9E-57 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 59 | 277 | 3.4E-67 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 717 | 881 | 1.8E-56 | IPR027417 |
| SMART | SM00490 | helicmild6 | 761 | 842 | 3.1E-31 | IPR001650 |
| SMART | SM00490 | helicmild6 | 322 | 403 | 3.1E-31 | IPR001650 |
| SMART | SM00487 | ultradead3 | 527 | 724 | 3.0E-57 | IPR014001 |
| SMART | SM00487 | ultradead3 | 88 | 285 | 6.1E-57 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 100 | 270 | 29.251823 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 508 | 536 | 10.632947 | IPR014014 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 281 | 442 | 24.899395 | IPR001650 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 720 | 881 | 25.093594 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 539 | 709 | 29.603916 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 69 | 97 | 10.345105 | IPR014014 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 655 | 663 | - | IPR000629 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 216 | 224 | - | IPR000629 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13920.1 | eukaryotic translation initiation factor 4A1. eukaryotic translation initiation factor 4A-1 | 0 |
| RefSeq | XP_028074207.1 | eukaryotic initiation factor 4A-15-like isoform X1 [Camellia sinensis] | 0 |
| Q40471 | Eukaryotic initiation factor 4A-9 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2G3B4B1 | Eukaryotic initiation factor 4A-11 OS=Capsicum chinense OX=80379 GN=BC332_31105 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology