Basic Information
Locus ID:
Sgl67894
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
ankyrin repeat family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB7 | 9209091 | 9216914 | - | Sgl67894 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.96 | 120,428.55 Da | 47.16 | 97.98 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08387 | FBD | 965 | 1008 | 4.4E-8 | IPR006566 |
| Pfam | PF13857 | Ankyrin repeats (many copies) | 290 | 333 | 9.9E-9 | - |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 74 | 171 | 7.0E-8 | IPR020683 |
| Pfam | PF13962 | Domain of unknown function | 421 | 528 | 7.3E-31 | IPR026961 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 179 | 250 | 9.3E-7 | IPR020683 |
| SUPERFAMILY | SSF52058 | L domain-like | 684 | 948 | 2.58E-9 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 605 | 652 | 7.72E-9 | IPR036047 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 73 | 370 | 3.73E-46 | IPR036770 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 604 | 843 | 4.2E-7 | IPR032675 |
| Gene3D | G3DSA:1.25.40.20 | - | 77 | 196 | 2.8E-15 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 197 | 399 | 7.1E-38 | IPR036770 |
| SMART | SM00248 | ANK_2a | 112 | 142 | 0.015 | IPR002110 |
| SMART | SM00248 | ANK_2a | 325 | 355 | 230.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 223 | 252 | 1.5E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 291 | 320 | 0.014 | IPR002110 |
| SMART | SM00579 | 9598neu4hmm | 970 | 1048 | 1.2E-7 | IPR006566 |
| SMART | SM00248 | ANK_2a | 147 | 176 | 7.8 | IPR002110 |
| SMART | SM00248 | ANK_2a | 257 | 286 | 39.0 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 147 | 173 | 8.667035 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 223 | 246 | 10.73959 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 147 | 179 | 9.030149 | IPR002110 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 604 | 640 | 9.550458 | IPR001810 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 223 | 246 | 10.709951 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 112 | 133 | 9.6979 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 112 | 133 | 9.675228 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 291 | 316 | 9.648697 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 291 | 323 | 10.2321 | IPR002110 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 394 | 414 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 24 | 51 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03460.2 | - | 0 |
| RefSeq | XP_021844108.1 | protein ACCELERATED CELL DEATH 6-like [Spinacia oleracea] | 0 |
| Q8LPS2 | Protein ACCELERATED CELL DEATH 6 OS=Arabidopsis thaliana OX=3702 GN=ACD6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RDR7 | FBD domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_084200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg3430 |
| Aizoaceae | Mesembryanthemum crystallinum | 4 | gene_14946, gene_2052, gene_21862, gene_26502 |
| Amaranthaceae | Atriplex hortensis | 48 | Ah002915, Ah002920, Ah003004, Ah004139, Ah004140, Ah004142 ... |
| Amaranthaceae | Beta vulgaris | 4 | BVRB_2g035510, BVRB_5g109100, BVRB_5g109110, BVRB_7g159590 |
| Amaranthaceae | Salicornia bigelovii | 21 | Sbi_jg15817, Sbi_jg17979, Sbi_jg19532, Sbi_jg19533 ... |
| Amaranthaceae | Salicornia europaea | 14 | Seu_jg10634, Seu_jg10635, Seu_jg1185, Seu_jg13817 ... |
| Amaranthaceae | Suaeda aralocaspica | 15 | GOSA_00003627, GOSA_00009189, GOSA_00009190, GOSA_00009191 ... |
| Amaranthaceae | Suaeda glauca | 41 | Sgl00558, Sgl05572, Sgl18083, Sgl22021, Sgl22137, Sgl27283 ... |
| Amaranthaceae | Chenopodium album | 51 | gene:ENSEOMG00000005049, gene:ENSEOMG00000007202 ... |
| Amaranthaceae | Chenopodium quinoa | 42 | CQ.Regalona.r1.2AG0012770, CQ.Regalona.r1.2AG0012790 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30150730 |
| Brassicaceae | Brassica nigra | 1 | BniB01g014240.2N |
| Plantaginaceae | Plantago ovata | 3 | Pov_00039776, Pov_00040470, Pov_00040689 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_061951 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-29604, nbis-gene-29605 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG04.3150, evm.TU.LG04.3151, evm.TU.LG16.532 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627161 |
| Solanaceae | Solanum chilense | 1 | SOLCI004431500 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.31115_chr11_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G0268 |