Basic Information
Locus ID:
Sgl66949
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
CCR4-associated factor 1 homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB7 | 3010961 | 3012508 | - | Sgl66949 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.60 | 31,656.61 Da | 34.58 | 89.71 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04857 | CAF1 family ribonuclease | 22 | 144 | 3.1E-12 | IPR006941 |
| Pfam | PF04857 | CAF1 family ribonuclease | 169 | 251 | 1.5E-5 | IPR006941 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 19 | 273 | 4.13E-91 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 6 | 276 | 4.0E-102 | IPR036397 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32070.1 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein. | 0 |
| RefSeq | XP_010665982.1 | probable CCR4-associated factor 1 homolog 7 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9SKZ2 | Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=CAF1-7 PE=2 SV=2 | 0 | |
| TrEMBL | A0A7C9DAD4 | poly(A)-specific ribonuclease OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology