Basic Information
Locus ID:
Sgl66884
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB7 | 2623102 | 2630114 | - | Sgl66884 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.12 | 116,374.76 Da | 44.40 | 85.29 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 795 | 828 | 0.021 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 376 | 410 | 0.0074 | IPR001680 |
| Pfam | PF17814 | LisH-like dimerisation domain | 11 | 34 | 1.5E-6 | - |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 474 | 966 | 6.91E-38 | IPR011047 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 271 | 583 | 1.56E-35 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 223 | 436 | 3.6E-24 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 844 | 989 | 4.7E-10 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 439 | 622 | 3.8E-13 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 623 | 843 | 2.8E-22 | IPR015943 |
| SMART | SM00320 | WD40_4 | 501 | 541 | 1.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 263 | 302 | 0.36 | IPR001680 |
| SMART | SM00320 | WD40_4 | 635 | 676 | 5.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 789 | 828 | 9.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 413 | 454 | 88.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 872 | 913 | 0.12 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 5.1E-6 | IPR006595 |
| SMART | SM00320 | WD40_4 | 553 | 585 | 310.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 746 | 786 | 2.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 369 | 410 | 6.1E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 319 | 363 | 310.0 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 0.0018 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 796 | 830 | 10.416506 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 796 | 837 | 12.814306 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 9.492783 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 269 | 311 | 9.138305 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 376 | 414 | 8.702878 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 519 | 550 | 9.104886 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 10.346251 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 376 | 419 | 10.976305 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 815 | 829 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 397 | 411 | - | IPR019775 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.1 | TOPLESS-related 1. | 0 |
| RefSeq | XP_048495165.1 | topless-related protein 1 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q0WV90 | Topless-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=TPR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A5B6ZFY6 | TOPLESS OS=Davidia involucrata OX=16924 GN=Din_012336 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_25213 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g030840 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018332 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl62347, Sgl66884 |