Basic Information
Locus ID:
Sgl66621
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
gag-polypeptide of LTR copia-type
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB7 | 839912 | 843742 | - | Sgl66621 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.28 | 95,753.22 Da | 46.10 | 84.65 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03732 | Retrotransposon gag protein | 98 | 209 | 1.4E-5 | IPR005162 |
| Pfam | PF14244 | gag-polypeptide of LTR copia-type | 33 | 79 | 3.2E-11 | IPR029472 |
| Pfam | PF00665 | Integrase core domain | 578 | 677 | 1.4E-12 | IPR001584 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 580 | 748 | 9.74E-36 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 571 | 757 | 2.1E-35 | IPR036397 |
| ProSiteProfiles | PS50994 | Integrase catalytic domain profile. | 564 | 741 | 18.132689 | IPR001584 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 256 | 285 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021863062.1 | uncharacterized protein LOC110801962 [Spinacia oleracea] | 0 |
| Q9ZT94 | Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1 | 0 | |
| TrEMBL | A0A834W7H2 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Senna tora OX=362788 GN=G2W53_033008 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg10961 |
| Amaranthaceae | Suaeda glauca | 13 | Sgl03301, Sgl07869, Sgl08373, Sgl10700, Sgl16034, Sgl34010 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.8BG0008630 |