Basic Information
Locus ID:
Sgl66126
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Autophagy-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA7 | 50051547 | 50056662 | - | Sgl66126 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.78 | 49,973.37 Da | 40.17 | 83.80 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 43 | 286 | 3.5E-29 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 34 | 304 | 6.4E-16 | IPR015943 |
| SMART | SM00320 | WD40_4 | 30 | 67 | 160.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 119 | 154 | 210.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 201 | 241 | 1.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 244 | 285 | 0.25 | IPR001680 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 427 | 439 | - | IPR018247 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G56440.1 | homolog of yeast autophagy 18 (ATG18) D. | 0 |
| RefSeq | XP_021864817.1 | autophagy-related protein 18c-like [Spinacia oleracea] | 0 |
| Q0WPK3 | Autophagy-related protein 18d OS=Arabidopsis thaliana OX=3702 GN=ATG18D PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9R198 | Autophagy-related protein 18c OS=Spinacia oleracea OX=3562 GN=SOVF_118040 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology