Basic Information
Locus ID:
Sgl66003
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
ribonuclease H protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA7 | 49025976 | 49034423 | - | Sgl66003 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.48 | 199,954.45 Da | 40.76 | 88.35 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01650 | RT_nLTR_like | 464 | 732 | 5.57991E-52 | - |
| CDD | cd06222 | RNase_H_like | 1177 | 1297 | 5.32809E-25 | IPR044730 |
| Pfam | PF13966 | zinc-binding in reverse transcriptase | 991 | 1074 | 2.1E-14 | IPR026960 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 470 | 712 | 1.1E-39 | IPR000477 |
| Pfam | PF00646 | F-box domain | 1358 | 1396 | 1.6E-9 | IPR001810 |
| Pfam | PF07734 | F-box associated | 1587 | 1691 | 3.9E-6 | IPR006527 |
| Pfam | PF13456 | Reverse transcriptase-like | 1178 | 1299 | 1.6E-17 | IPR002156 |
| SUPERFAMILY | SSF81383 | F-box domain | 1357 | 1403 | 3.01E-12 | IPR036047 |
| SUPERFAMILY | SSF56219 | DNase I-like | 2 | 201 | 1.57E-24 | IPR036691 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 1176 | 1301 | 5.16E-12 | IPR012337 |
| Gene3D | G3DSA:3.60.10.10 | Endonuclease/exonuclease/phosphatase | 1 | 202 | 1.5E-24 | IPR036691 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1357 | 1395 | 1.5E-7 | - |
| Gene3D | G3DSA:3.30.420.10 | - | 1175 | 1303 | 2.3E-12 | IPR036397 |
| SMART | SM00256 | fbox_2 | 1359 | 1399 | 4.5E-10 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 1497 | 1696 | 3.9E-23 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1353 | 1404 | 11.272594 | IPR001810 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 451 | 732 | 15.640287 | IPR000477 |
| Coils | Coil | Coil | 293 | 313 | - | - |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16210.1 | F-box family protein. | 0 |
| RefSeq | XP_048497307.1 | uncharacterized protein LOC104885230 [Beta vulgaris subsp. vulgaris] | 0 |
| P16423 | Retrovirus-related Pol polyprotein from type-2 retrotransposable element R2DM OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1 | 0 | |
| TrEMBL | A0A2N9EMX2 | Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS8069 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||