Basic Information
Locus ID:
Sgl65915
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA7 | 47997981 | 48003579 | + | Sgl65915 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.91 | 167,840.77 Da | 36.93 | 107.19 | 0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 308 | 595 | 5.23822E-79 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 624 | 824 | 2.16228E-100 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 929 | 1223 | 3.11885E-84 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1246 | 1466 | 4.48386E-104 | - |
| Pfam | PF00005 | ABC transporter | 1266 | 1413 | 2.1E-31 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 931 | 1172 | 6.3E-37 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 642 | 776 | 1.1E-18 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 309 | 573 | 1.9E-17 | IPR011527 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 301 | 600 | 6.8E-26 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 916 | 1219 | 1.02E-51 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 623 | 844 | 1.39E-54 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1240 | 1474 | 2.51E-66 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1230 | 1484 | 5.0E-80 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 603 | 863 | 1.6E-72 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 297 | 602 | 2.3E-39 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 890 | 1229 | 3.9E-62 | IPR036640 |
| SMART | SM00382 | AAA_5 | 1274 | 1459 | 9.3E-11 | IPR003593 |
| SMART | SM00382 | AAA_5 | 651 | 824 | 5.2E-14 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1248 | 1482 | 18.947704 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 624 | 847 | 22.529119 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 307 | 587 | 26.684248 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 931 | 1211 | 36.65519 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 749 | 763 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 889 | 903 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 877 | 903 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_021736749.1 | ABC transporter C family member 3-like [Chenopodium quinoa] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803M645 | ABC-type xenobiotic transporter OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology