Basic Information
Locus ID:
Sgl65769
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
RING finger and CHY zinc finger domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA7 | 46601255 | 46607917 | - | Sgl65769 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.14 | 33,168.90 Da | 50.79 | 55.80 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14599 | Zinc-ribbon | 226 | 284 | 3.4E-24 | IPR039512 |
| Pfam | PF05495 | CHY zinc finger | 43 | 124 | 1.1E-18 | IPR008913 |
| Pfam | PF13639 | Ring finger domain | 178 | 221 | 5.8E-9 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 178 | 227 | 4.42E-10 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 115 | 172 | 3.27E-19 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 40 | 114 | 1.83E-16 | IPR037274 |
| Gene3D | G3DSA:2.20.28.10 | - | 250 | 288 | 1.0E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 173 | 224 | 1.3E-11 | IPR013083 |
| SMART | SM00184 | ring_2 | 179 | 221 | 2.8E-8 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 36 | 112 | 25.579367 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 114 | 178 | 33.971954 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 179 | 222 | 12.223724 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25560.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_021862719.1 | probable E3 ubiquitin-protein ligase RZFP34 isoform X1 [Spinacia oleracea] | 0 |
| Q5JL96 | Probable E3 ubiquitin-protein ligase RZFP34 OS=Oryza sativa subsp. japonica OX=39947 GN=RZFP34 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QPK0 | RING finger and CHY zinc finger domain-containing protein 1 OS=Spinacia oleracea OX=3562 GN=SOVF_155740 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology