Basic Information
Locus ID:
Sgl65518
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
ribonuclease H protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA7 | 43570232 | 43573285 | + | Sgl65518 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.60 | 95,883.40 Da | 29.44 | 84.72 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01650 | RT_nLTR_like | 302 | 550 | 1.50925E-40 | - |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 307 | 529 | 5.6E-36 | IPR000477 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 242 | 533 | 4.54E-12 | IPR043502 |
| Gene3D | G3DSA:1.10.10.2210 | - | 327 | 456 | 2.6E-5 | - |
| Gene3D | G3DSA:3.10.10.20 | - | 302 | 434 | 2.6E-5 | - |
| Gene3D | G3DSA:3.30.70.2630 | - | 347 | 381 | 2.6E-5 | - |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 288 | 553 | 12.278451 | IPR000477 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021858531.1 | uncharacterized protein LOC110797725 [Spinacia oleracea] | 0 |
| P92555 | Uncharacterized mitochondrial protein AtMg01250 OS=Arabidopsis thaliana OX=3702 GN=AtMg01250 PE=4 SV=1 | 0 | |
| TrEMBL | F4NCH8 | Reverse transcriptase domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00010071, GOSA_00015070 |
| Amaranthaceae | Suaeda glauca | 45 | Sgl00660, Sgl00734, Sgl02856, Sgl04536, Sgl05678, Sgl09582 ... |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000022031 |