Basic Information
Locus ID:
Sgl65406
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
high mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA7 | 42016463 | 42017922 | + | Sgl65406 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.65 | 33,219.80 Da | 45.54 | 81.75 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 193 | 253 | 1.10301E-18 | - |
| Pfam | PF00505 | HMG (high mobility group) box | 193 | 253 | 2.2E-12 | IPR009071 |
| SUPERFAMILY | SSF47095 | HMG-box | 180 | 254 | 1.06E-16 | IPR036910 |
| SUPERFAMILY | SSF46774 | ARID-like | 15 | 61 | 1.96E-7 | IPR036431 |
| Gene3D | G3DSA:1.10.150.60 | - | 14 | 70 | 3.2E-6 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 179 | 261 | 1.3E-16 | IPR036910 |
| SMART | SM00398 | hmgende2 | 192 | 261 | 2.1E-10 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 1 | 60 | 11.853123 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 193 | 260 | 13.309845 | IPR009071 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 161 | 192 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 161 | 178 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04880.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_021837956.1 | high mobility group B protein 15-like isoform X2 [Spinacia oleracea] | 0 |
| Q9MAT6 | High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803LZC3 | High mobility group B protein 15-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology