Basic Information
Locus ID:
Sgl65401
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Ribonuclease H protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA7 | 41920019 | 41935489 | - | Sgl65401 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.34 | 163,814.36 Da | 49.50 | 74.65 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01650 | RT_nLTR_like | 144 | 409 | 1.18829E-55 | - |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 149 | 381 | 2.7E-42 | IPR000477 |
| Pfam | PF14223 | gag-polypeptide of LTR copia-type | 716 | 852 | 1.3E-21 | - |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 1081 | 1371 | 6.28E-6 | IPR011047 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 148 | 400 | 1.13E-15 | IPR043502 |
| Gene3D | G3DSA:2.160.20.10 | - | 1363 | 1416 | 2.1E-8 | IPR012334 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 130 | 412 | 14.061864 | IPR000477 |
| ProSitePatterns | PS00503 | Pectinesterase signature 2. | 1393 | 1402 | - | IPR033131 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 898 | 926 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 848 | 939 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 849 | 889 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1284 | 1298 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1240 | 1301 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1240 | 1261 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1268 | 1283 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G48050.1 | 0 | |
| RefSeq | XP_021854772.1 | uncharacterized protein LOC110794134 [Spinacia oleracea] | 0 |
| P11369 | LINE-1 retrotransposable element ORF2 protein OS=Mus musculus OX=10090 GN=Pol PE=1 SV=2 | 0 | |
| TrEMBL | F4NCH8 | Reverse transcriptase domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00010071, GOSA_00015070 |
| Amaranthaceae | Suaeda glauca | 45 | Sgl00660, Sgl00734, Sgl02856, Sgl04536, Sgl05678, Sgl09582 ... |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000022031 |