Basic Information
Locus ID:
Sgl65340
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA7 | 41289005 | 41300022 | - | Sgl65340 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.69 | 83,699.01 Da | 44.97 | 77.44 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 171 | 475 | 1.26586E-158 | - |
| Pfam | PF01753 | MYND finger | 81 | 118 | 5.7E-10 | IPR002893 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 172 | 475 | 2.5E-45 | IPR001394 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 78 | 122 | 4.53E-10 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 168 | 486 | 7.46E-89 | IPR038765 |
| Gene3D | G3DSA:6.10.140.2220 | - | 68 | 124 | 1.2E-12 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 169 | 487 | 1.3E-92 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 172 | 478 | 48.443317 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 81 | 118 | 12.39774 | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 173 | 188 | - | IPR018200 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 81 | 118 | - | IPR002893 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G24640.1 | ubiquitin-specific protease 19. | 0 |
| RefSeq | XP_021755587.1 | ubiquitin carboxyl-terminal hydrolase 18-like [Chenopodium quinoa] | 0 |
| Q9SJA1 | Ubiquitin carboxyl-terminal hydrolase 19 OS=Arabidopsis thaliana OX=3702 GN=UBP19 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803LXU6 | Ubiquitin carboxyl-terminal hydrolase 18-like OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology