Basic Information
Locus ID:
Sgl64965
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Mitochondrial protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA7 | 34039602 | 34048866 | - | Sgl64965 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.53 | 322,702.53 Da | 38.52 | 82.54 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09272 | RNase_HI_RT_Ty1 | 2678 | 2816 | 6.59442E-72 | - |
| CDD | cd01650 | RT_nLTR_like | 1590 | 1858 | 2.50218E-51 | - |
| CDD | cd06222 | RNase_H_like | 2303 | 2423 | 7.26578E-25 | IPR044730 |
| Pfam | PF13456 | Reverse transcriptase-like | 2304 | 2425 | 2.9E-17 | IPR002156 |
| Pfam | PF13966 | zinc-binding in reverse transcriptase | 2117 | 2200 | 3.6E-14 | IPR026960 |
| Pfam | PF07727 | Reverse transcriptase (RNA-dependent DNA polymerase) | 2466 | 2538 | 2.3E-21 | IPR013103 |
| Pfam | PF14223 | gag-polypeptide of LTR copia-type | 48 | 187 | 7.4E-25 | - |
| Pfam | PF13976 | GAG-pre-integrase domain | 733 | 803 | 9.3E-14 | IPR025724 |
| Pfam | PF00665 | Integrase core domain | 817 | 918 | 1.0E-13 | IPR001584 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 1596 | 1838 | 1.0E-38 | IPR000477 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 816 | 980 | 2.02E-44 | IPR012337 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 2302 | 2427 | 1.52E-11 | IPR012337 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 2480 | 2780 | 1.82E-10 | IPR043502 |
| SUPERFAMILY | SSF56219 | DNase I-like | 1263 | 1327 | 3.45E-6 | IPR036691 |
| Gene3D | G3DSA:3.30.420.10 | - | 2301 | 2429 | 4.2E-12 | IPR036397 |
| Gene3D | G3DSA:3.30.420.10 | - | 811 | 996 | 2.7E-45 | IPR036397 |
| SMART | SM00343 | c2hcfinal6 | 576 | 592 | 0.042 | IPR001878 |
| SMART | SM00343 | c2hcfinal6 | 259 | 275 | 0.018 | IPR001878 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 1577 | 1858 | 15.332802 | IPR000477 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 260 | 274 | 8.762648 | IPR001878 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 577 | 590 | 9.570305 | IPR001878 |
| ProSiteProfiles | PS50994 | Integrase catalytic domain profile. | 815 | 981 | 25.979574 | IPR001584 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1115 | 1181 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1115 | 1185 | - | - |
| Coils | Coil | Coil | 402 | 422 | - | - |
| Coils | Coil | Coil | 1419 | 1439 | - | - |
| Coils | Coil | Coil | 499 | 519 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G20520.1 | RNA binding;RNA-directed DNA polymerases. | 0 |
| RefSeq | XP_021836371.1 | uncharacterized protein LOC110776120 [Spinacia oleracea] | 0 |
| Q94HW2 | Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1 | 0 | |
| TrEMBL | A2I5F8 | Integrase OS=Beta vulgaris OX=161934 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||