Basic Information
Locus ID:
Sgl64228
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
high mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA7 | 18477377 | 18477943 | + | Sgl64228 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.96 | 18,387.84 Da | 55.65 | 65.47 | -0.97 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 80 | 144 | 1.39202E-20 | - |
| Pfam | PF00505 | HMG (high mobility group) box | 80 | 147 | 2.2E-15 | IPR009071 |
| SUPERFAMILY | SSF47095 | HMG-box | 68 | 152 | 1.7E-20 | IPR036910 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 61 | 158 | 2.2E-20 | IPR036910 |
| SMART | SM00398 | hmgende2 | 79 | 148 | 7.9E-17 | IPR009071 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 80 | 147 | 15.648897 | IPR009071 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 40 | 57 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 40 | 88 | - | - |
| Coils | Coil | Coil | 136 | 156 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04880.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_021749149.1 | high mobility group B protein 15-like isoform X2 [Chenopodium quinoa] | 0 |
| Q9MAT6 | High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803LZC3 | High mobility group B protein 15-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology