Basic Information
Locus ID:
Sgl63808
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Short Name:
TPL
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA7 | 13444331 | 13445225 | - | Sgl63808 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.56 | 27,698.40 Da | 25.83 | 80.50 | -0.53 |
Protein Domain:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G15750.1 | Transducin family protein / WD-40 repeat family protein. Encodes a protein with several WD40 repeats at the C-terminus and predicted protein-protein interaction domains at the N-terminus. Together with the TOPLESS-RELATED PROTEINS (TPRs), it is thought to be involved in transcriptional repression of root-promoting genes in the top half of the embryo during the transition stage of embryogenesis. It can also interact with IAA12 through the EAR domain of IAA12 and the CTLH domain of TPL. The ability of IAA12 to repress transcription is diminished in a tpl-1 mutant background. | 0 |
| RefSeq | XP_050914405.1 | protein TOPLESS-like [Pisum sativum] | 0 |
| Q94AI7 | Protein TOPLESS OS=Arabidopsis thaliana OX=3702 GN=TPL PE=1 SV=1 | 0 | |
| TrEMBL | A0A2I0HSB2 | Protein TOPLESS OS=Punica granatum OX=22663 GN=CRG98_045230 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda glauca | 5 | Sgl13166, Sgl15271, Sgl18389, Sgl35793, Sgl63808 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.4BG0018880 |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30080030, pistato.v30081240, pistato.v30099810 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G010590 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_01.130.V1.1, AsparagusV1_03.1555.V1.1 ... |
| Poaceae | Sporobolus alterniflorus | 1 | Chr29G011090 |
| Poaceae | Zea mays | 1 | Zm00001eb019610_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-39020 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22323 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132639592 |