Basic Information
Locus ID:
Sgl63797
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
ribonuclease H protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA7 | 13227320 | 13231646 | - | Sgl63797 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.23 | 133,629.56 Da | 53.49 | 78.39 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01650 | RT_nLTR_like | 885 | 1118 | 1.73317E-54 | - |
| Pfam | PF14111 | Domain of unknown function (DUF4283) | 106 | 200 | 1.7E-11 | IPR025558 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 891 | 1119 | 1.9E-42 | IPR000477 |
| SUPERFAMILY | SSF56219 | DNase I-like | 503 | 660 | 8.11E-15 | IPR036691 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 817 | 1120 | 4.23E-20 | IPR043502 |
| Gene3D | G3DSA:3.60.10.10 | Endonuclease/exonuclease/phosphatase | 478 | 661 | 2.2E-16 | IPR036691 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 872 | 1144 | 19.022623 | IPR000477 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 46 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 262 | 296 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 297 | 315 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 262 | 336 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 22 | 36 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G43760.1 | DNAse I-like superfamily protein. | 0 |
| RefSeq | XP_048497307.1 | uncharacterized protein LOC104885230 [Beta vulgaris subsp. vulgaris] | 0 |
| P14381 | Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis OX=8355 PE=4 SV=1 | 0 | |
| TrEMBL | A0A2N9FPU3 | CCHC-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS17027 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||