Basic Information
Locus ID:
Sgl63419
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA7 | 9753420 | 9768469 | - | Sgl63419 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.17 | 132,618.89 Da | 51.29 | 100.02 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 79 | 118 | 0.001 | IPR001810 |
| Pfam | PF00646 | F-box domain | 583 | 618 | 1.3E-6 | IPR001810 |
| Pfam | PF00646 | F-box domain | 833 | 869 | 7.5E-5 | IPR001810 |
| Pfam | PF08387 | FBD | 464 | 509 | 3.8E-7 | IPR006566 |
| Pfam | PF00646 | F-box domain | 10 | 44 | 1.1E-4 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 8 | 46 | 3.92E-9 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 832 | 887 | 4.32E-10 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 582 | 629 | 4.97E-10 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 201 | 451 | 4.47E-5 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 71 | 133 | 3.14E-6 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 580 | 621 | 1.1E-5 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 75 | 360 | 1.0E-7 | IPR032675 |
| SMART | SM00256 | fbox_2 | 586 | 625 | 3.1E-5 | IPR001810 |
| SMART | SM00256 | fbox_2 | 83 | 123 | 7.0 | IPR001810 |
| SMART | SM00579 | 9598neu4hmm | 468 | 549 | 2.2E-4 | IPR006566 |
| SMART | SM00256 | fbox_2 | 837 | 877 | 0.028 | IPR001810 |
| SMART | SM00256 | fbox_2 | 14 | 54 | 0.084 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 831 | 867 | 9.126548 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 580 | 626 | 10.689717 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 8 | 54 | 9.894885 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G78750.1 | F-box/RNI-like superfamily protein. | 0 |
| RefSeq | XP_021843969.1 | F-box/FBD/LRR-repeat protein At5g22660-like [Spinacia oleracea] | 0 |
| Q9ZV93 | F-box/FBD/LRR-repeat protein At1g78750 OS=Arabidopsis thaliana OX=3702 GN=At1g78750 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RJT5 | F-box domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_058460 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg3430 |
| Aizoaceae | Mesembryanthemum crystallinum | 4 | gene_14946, gene_2052, gene_21862, gene_26502 |
| Amaranthaceae | Atriplex hortensis | 48 | Ah002915, Ah002920, Ah003004, Ah004139, Ah004140, Ah004142 ... |
| Amaranthaceae | Beta vulgaris | 4 | BVRB_2g035510, BVRB_5g109100, BVRB_5g109110, BVRB_7g159590 |
| Amaranthaceae | Salicornia bigelovii | 21 | Sbi_jg15817, Sbi_jg17979, Sbi_jg19532, Sbi_jg19533 ... |
| Amaranthaceae | Salicornia europaea | 14 | Seu_jg10634, Seu_jg10635, Seu_jg1185, Seu_jg13817 ... |
| Amaranthaceae | Suaeda aralocaspica | 15 | GOSA_00003627, GOSA_00009189, GOSA_00009190, GOSA_00009191 ... |
| Amaranthaceae | Suaeda glauca | 41 | Sgl00558, Sgl05572, Sgl18083, Sgl22021, Sgl22137, Sgl27283 ... |
| Amaranthaceae | Chenopodium album | 51 | gene:ENSEOMG00000005049, gene:ENSEOMG00000007202 ... |
| Amaranthaceae | Chenopodium quinoa | 42 | CQ.Regalona.r1.2AG0012770, CQ.Regalona.r1.2AG0012790 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30150730 |
| Brassicaceae | Brassica nigra | 1 | BniB01g014240.2N |
| Plantaginaceae | Plantago ovata | 3 | Pov_00039776, Pov_00040470, Pov_00040689 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_061951 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-29604, nbis-gene-29605 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG04.3150, evm.TU.LG04.3151, evm.TU.LG16.532 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627161 |
| Solanaceae | Solanum chilense | 1 | SOLCI004431500 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.31115_chr11_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G0268 |